<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06009
Description |
Mediator of RNA polymerase II transcription subunit 14 (Fragment) |
Sequence | LLMIPSVNCAITKMSGDEESMDFEEKLAAFPLPSIPANQGPPFMAFGVLLDFAVQKTYQDFVILTDLLPKKSDLDRKISIAQFAHSARQLFVRLYAILKWARCGAKVDLCTGIVCFLDQQASMFVDTADRLYQMNCDVLQNARLPVFQIPTAVDVLTLGTYPRLPSVIKREFIRTADISQEEEECVLHRLNYVIERRLLPSLLTLPEGMRNFTVNNGMVTFHVAGEFEAQLTLLGQLPRTPWTLLNLRILVSDPRVTDGSDILSSLQLSFLHHLIQSRLNVSKEPIVELYRVIHCFCLSAQLDILCCQAYRLIGDFMSENLSVEEYVSSEKLVLSYWKEQNQGGVASFKVIFWINQDEPFAPLQVTHIPKSELKLPSMDTESGQLSLDNLLTETVLIRVKHRLQQLCDFLRTIKGLTCTFISDMPALSITFLPDSSFTETLDLSMNLFTGKFVCRLPAFDEDISLIAQLTEKLDDSHWNCLEDLLHQIRVRIFVNRIDHTMRFFTLKSCETLPAFLKTACEQWPVDRRFIIKFHRFENYYIVLTFNDHPDDSAKVNLDFWLVCNETVSNAIRSADADDDVRSKKNVNLLHFDLRRVVSETKVKKQCVIPELMAAFSMCENAMPFFLLMEEMERTSARYAYHQLFDGTVVLRVLGIDQTYDRNLEKIFGLPKGLAIGLSCDRHRVVWSIELNTTGSPLGDSSSFGRAVHRKITILSCTVGNESARKCLDDVLSGVRCFNALYEPVKALAGAYKSCLHRMTPLSMLSSYKLTLVYGPMLRYVCHLQWKPSEKMYILSFGVDNSVLNEEYVYFNPHSILCGHLQHWFNTVRDISALAHLLQASSAALQALTTLPDTIFRVGSEHTSNQMLYLNRMFSILPTGPDTVRLLCKDHLCLEMRFTFSGSVFMRDCGSAFGLPQMKSVKYVPITGFKTFLNLHISEMKAAIEAERKVSTAVHESLMEVSDVDFSGNTFQANPNSGTGSSMVLENSMRTSTQNRLIGNSLANDDGHAEPSSRSPPEDWTPCVVPIEIQQNAFIRICSPSGTHPHPEWSHLQKFILSVEVLEKMKEQANNFTVIRPGQLSLKCNQSEMKFFLNESNLSSVMFKFFRDENDACTESDVQFLEKYFLEQISSTYNAAAMYAFVRMLTVCQTIRRDLLSSFLSIMNIQQHAYVESSTAYWIPEMCFLIPSPQLVPTTYLSRATLMPGGLAIVANVVQKKMLFWIKFVRVADPSHCVAFPFLYDGENNSLQVFRGTNQQTAQQSNCTVYPIETCLLRQQQTHSAFSECVVWPCIRDVMHINELIPGRS |
Length | 1304 |
Position | Tail |
Organism | Trichinella sp. T9 |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia>
Trichinellida> Trichinellidae> Trichinella> unclassified Trichinella.
|
Aromaticity | 0.10 |
Grand average of hydropathy | -0.009 |
Instability index | 44.19 |
Isoelectric point | 6.07 |
Molecular weight | 148088.36 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU365082
|
GO - Cellular Component | mediator complex GO:0016592 IEA:UniProtKB-UniRule
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:UniProtKB-UniRule
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP06009
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 111.53| 23| 54| 437| 459| 1
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124- 147 (23.75/11.72) FVDTADrlYQMN......CDvlqnaRLPVF
437- 459 (43.65/28.26) FTETLD..LSMNLFTGKFVC.....RLPAF
493- 515 (44.13/28.66) FVNRID..HTMRFFTLKSCE.....TLPAF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 71.37| 22| 366| 296| 324| 2
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296- 324 (34.01/30.53) FCLSAQLDI.LCCQAYRLIgdfmsenLSVE
667- 689 (37.35/18.72) FGLPKGLAIgLSCDRHRVV.......WSIE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 88.97| 27| 140| 611| 657| 5
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373- 399 (43.21/17.76) LKLPSMDTESGQLSLDNLLTETVLIRV
626- 652 (45.76/29.01) LLMEEMERTSARYAYHQLFDGTVVLRV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 268.61| 89| 633| 155| 253| 7
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155- 253 (133.24/99.75) VLTLGTYprlPSVIKREFIRtadISQEEEEC..VLHRLNYVIERRLLPSLL.TLPEGMRNFTVNNGMVtFHVAGEFEA.QLTLLGQ....LPRTPWTllnLRILVSD
793- 889 (135.37/77.42) ILSFGVD...NSVLNEEYVY...FNPHSILCghLQHWFNTVRDISALAHLLqASSAALQALTTLPDTI.FRVGSEHTSnQMLYLNRmfsiLPTGPDT...VRLLCKD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 113.43| 35| 447| 75| 115| 12
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75- 115 (51.54/50.69) DRKIsIAQFaHSarqlFVRLYAILKWARC...GAKVDLCTGIVC
526- 563 (61.90/40.05) DRRF.IIKF.HR....FENYYIVLTFNDHpddSAKVNLDFWLVC
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