<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06006
Description |
Mediator of RNA polymerase II transcription subunit 14 (Fragment) |
Sequence | LLMIPSVNCAITKMSGDEESMDFEEKLAAFPLPSIPANQGPPFMAFGVLLDFAVQKTYQDFVILTDLLPKKSDLDRKISIAQFAHSARQLFVRLYAILKWARCGAKVDLCTGIVCFLDQQASMFVDTADRLYQMNCDVLQNARLPVFQIPTAVDVLTLGTYPRLPSVIKREFIRTADISQEEEECVLHRLNYVIERRLLPSLLTLPEGMRNFTVNNGMVNHGLVTFHVAGEFEAQLTLLGQLPRTPWTLLNLRILVSDPRVTDGSDILSSLQLSFLHHLIQSRLNVSKEPIVELYRVIHCFCLSAQLDILCCQAYRLIGDFMSENLSVEEYVSSEKLVLSYWKEQNQGGVASFKVIFWINQDEPFAPLQVTHIPKSELKLPSMDTESGQLSLDNLLTETVLIRVKHRLQQLCDFLRTIKGLTCTFISDMPALSITFLPDSSFTETLDLSMNLFTGKFVCRLPAFDEDISLIAQLTEKLDDSHWNCLEDLLHQIRYFFPFNFFVYGNEFLNFSVRIFVNRIDHTMRFFTLKSCETLPAFLKTACEQWPVDRRFIIKFHRFENYYIVLTFNDHPDDSAKVNLDFWLVCNETVSNAIRSADADDDVRSKKNVNLLHFDLRRVVSETKVKKQCVIPELMAAFSMCENAMPFFLLMEEMERTSARYAYHQLFDGTVVLRVLGIDQTYDRNLEKIFGLPKGLAIGLSCDRHRVVWSIELNTTGSPLGDSSSFGRAVHRKITILSCTVGNESARKCLDDVLSGVRCFNALYEPVKALAGAYKSCLHRMTPLSMLSSYKLTLVYGPMLRYVCHLQWKPSEKMYILSFGVDNSVLNEEYVYFNPHSILCGHLQHWFNTVRDISALAHLLQASSAALQALTTLPDTIFRVGSEHTSNQMLYLNRMFSILPTGPDTVRLLCKDHLCLEMRFTFSGSVFMRDCGSAFGLPQMKSVKYVPITGFKTFLNLHISEMKAAIEAERKVSTAVHESLMEVSDVDFSGNTFQANPNSGTGSSMVLENSMRTSTQNRLIGNSLANDDGHAEPSSRSPPEDWTPCVVPIEIQQNAFIRICSPSGTHPHPEWSHLQKFILSVEVLEKMKEQANNFTVIRPGQLSLKCNQSEMKFFLNESNLSSVMFKFFRDENDACTESDVQFLEKYFLEQISSTYNAAAMYAFVRMLTVCQTIRRDLLSSFLSIMNIQQHAYVESSTAYWIPEMCFLIPSPQLVPTTYLSRATLMPGGLAIVANVVQKKMLFWIKFVRVADPSHCVAFPFLYDGENNSLQVFRGTNQQTAQQSNCTVYPIETCLLRQQQTHSAFSECVVWPCIRDVMHINELIPGRS |
Length | 1327 |
Position | Tail |
Organism | Trichinella sp. T9 |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia>
Trichinellida> Trichinellidae> Trichinella> unclassified Trichinella.
|
Aromaticity | 0.10 |
Grand average of hydropathy | -0.002 |
Instability index | 43.34 |
Isoelectric point | 6.05 |
Molecular weight | 150890.46 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU365082
|
GO - Cellular Component | mediator complex GO:0016592 IEA:UniProtKB-UniRule
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:UniProtKB-UniRule
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP06006
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 235.87| 75| 133| 1050| 1133| 1
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1050- 1133 (116.37/106.15) EIQQNAFIRicsPSGTHPHPEWSHLqkfILSVEVLEkmKEQANNFTVIrPGQLSLKCN..QSEMKF...FLNESNLS.SVMFKFFRD.END
1186- 1267 (119.50/80.54) NIQQHAYVE...SSTAYWIPEMCFL...IPSPQLVP..TTYLSRATLM.PGGLAIVANvvQKKMLFwikFVRVADPShCVAFPFLYDgENN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 96.69| 27| 133| 438| 468| 3
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438- 464 (50.74/32.04) PDSS..FTETLDLSMNLFTGKFVCRLPAF
510- 538 (45.95/20.17) NFSVriFVNRIDHTMRFFTLKSCETLPAF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 132.41| 44| 656| 242| 291| 4
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242- 291 (62.73/46.39) LPRTPWTllnLRILVSDP.....RVT.DGSDILSSLQLSFlhHLIQSRlNVSKEPI
899- 948 (69.68/35.73) LPTGPDT...VRLLCKDHlclemRFTfSGSVFMRDCGSAF..GLPQMK.SVKYVPI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 172.80| 65| 317| 293| 361| 5
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293- 325 (45.14/28.81) .................................................................................................................................................................................................................................................................................................EL.Y..RVIHCFCLSAQLDI.LCCQAYRLIGDF.MSEN
326- 361 (29.32/31.01) LSVEEYvssEKLVLSYWKEQNQGGVASFKVIfWINQ...................................................................................................................................................................................................................................................................................................
615- 643 (25.26/11.53) ....................................depfaplqvthipkselklpsmdtesgqlsldnlltetvlirvkhrlqqlcdflrtikgltctfisdmpalsitflpdssftetldlsmnlftgkfvcrlpafdedisliaqlteklddshwncledllhqiryffpfnffvygneflnfsvrifvnridhtmrfftlkscetlpaflktaceqwpvdrrfiikfhrfenyyivltfndhpddsakvnldfwlvcnetvsnairsadadddvrskknvnllhfDL.R..RVVSETKVKKQ......CVIPELMAAFsMCEN
649- 708 (73.09/54.51) LLMEEM...ERTSARYAYHQLFDGTVVLRVL.GIDQ...............................................................................................................................................................................................................................................................tYdrNLEKIFGLPKGLAIgLSCDRHRVV........
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 137.79| 46| 457| 75| 129| 7
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75- 129 (59.83/63.62) DRKIsIAQFaHSarqlFVRLYAILKWAR...cGAKVDLCTGIVCflDQQASMFVDTAD
549- 598 (77.96/47.81) DRRF.IIKF.HR....FENYYIVLTFNDhpddSAKVNLDFWLVC..NETVSNAIRSAD
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