<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06005

Description Endoplasmic reticulum-Golgi intermediate compartment protein 2
SequenceMPYAWIKATRKEAHSSHVPLFIRELLGEADSLHSEAADLWGRPELGRAHCIVFGMFGVRQRKKPVISFMERLDAFPKIRQSVRMEYSASHVFLAFLVIVIWLIYCEFLYFSEIYYAYTFTVDTSFKEYGGAFDFFAVGFSVYSQLTLYVDLTVATKCEYLATSMDGVKQKSLASSEEISMVPVRFKLSPDAQLYWNMLRNVRSRFEFSKELHVPERLHHLSERNSLGFEIWRHLHEFAVDRQNNASSTETAIVDACRIHGYFLMNKLRGKLRIKFKETVRLEAVSNFFIFARRQNEGFNFSHRIEKFGFGPRIAGIINPLDGFQKESFDRRDMFYYYIQVVPTKIIDLNGMETFTSQYSVTHKRRIIDHDQGSHGSCGIFIYFDFAPMMVLIRKSKTSLFVFALRICAIVGGIFACTGNCMEEYNGDVINNFRQAVKSCLTLLSVPVKTRHIEADEIKTTAEVATHRLIEAARRSERHFVRLYALFSAYCPEEVLKEEINDMKQEIERKKNMLLKHEEKMIAWEQILSEAETPLTS
Length536
PositionHead
OrganismTrichinella sp. T9
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella> unclassified Trichinella.
Aromaticity0.13
Grand average of hydropathy-0.138
Instability index45.11
Isoelectric point8.51
Molecular weight62287.14
Publications









Function






Annotated function

Possible role in transport between endoplasmic reticulum and
Golgi. 


ECO:0000256	ARBA:ARBA00002776

GO - Cellular Component
endoplasmic reticulum-Golgi intermediate compartment membrane	GO:0033116	IEA:UniProtKB-SubCell
integral component of membrane	GO:0016021	IEA:UniProtKB-KW

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06005
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.34|      16|      17|      14|      29|       1
---------------------------------------------------------------------------
   14-   29 (28.93/19.51)	HSSHVPLFIRELLGEA
   33-   48 (30.41/20.86)	HSEAADLWGRPELGRA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.70|      10|      17|     181|     190|       2
---------------------------------------------------------------------------
  181-  190 (18.28/13.14)	VPVRFKLSPD
  201-  210 (17.42/12.13)	VRSRFEFSKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.85|      15|      17|     114|     128|       3
---------------------------------------------------------------------------
  114-  128 (27.55/15.76)	YYAYTFTVDTSFKEY
  134-  148 (26.30/14.78)	FFAVGFSVYSQLTLY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     157.93|      49|     101|     341|     391|       5
---------------------------------------------------------------------------
  341-  391 (84.30/60.84)	VPTKIIDLNGMETFTSQYSVTHkrRIIDHDQGSHGS.CGIFIYFD.FAPMMVL
  445-  495 (73.63/46.95)	VPVKTRHIEADEIKTTAEVATH..RLIEAARRSERHfVRLYALFSaYCPEEVL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06005 with Med28 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA