<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06005

Description Endoplasmic reticulum-Golgi intermediate compartment protein 2
SequenceMPYAWIKATRKEAHSSHVPLFIRELLGEADSLHSEAADLWGRPELGRAHCIVFGMFGVRQRKKPVISFMERLDAFPKIRQSVRMEYSASHVFLAFLVIVIWLIYCEFLYFSEIYYAYTFTVDTSFKEYGGAFDFFAVGFSVYSQLTLYVDLTVATKCEYLATSMDGVKQKSLASSEEISMVPVRFKLSPDAQLYWNMLRNVRSRFEFSKELHVPERLHHLSERNSLGFEIWRHLHEFAVDRQNNASSTETAIVDACRIHGYFLMNKLRGKLRIKFKETVRLEAVSNFFIFARRQNEGFNFSHRIEKFGFGPRIAGIINPLDGFQKESFDRRDMFYYYIQVVPTKIIDLNGMETFTSQYSVTHKRRIIDHDQGSHGSCGIFIYFDFAPMMVLIRKSKTSLFVFALRICAIVGGIFACTGNCMEEYNGDVINNFRQAVKSCLTLLSVPVKTRHIEADEIKTTAEVATHRLIEAARRSERHFVRLYALFSAYCPEEVLKEEINDMKQEIERKKNMLLKHEEKMIAWEQILSEAETPLTS
Length536
PositionHead
OrganismTrichinella sp. T9
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella> unclassified Trichinella.
Aromaticity0.13
Grand average of hydropathy-0.138
Instability index45.11
Isoelectric point8.51
Molecular weight62287.14
Publications









Function






Annotated function

Possible role in transport between endoplasmic reticulum and
Golgi. 


GO - Cellular Component
endoplasmic reticulum-Golgi intermediate compartment membrane	GO:0033116	IEA:UniProtKB-SubCell
integral component of membrane	GO:0016021	IEA:UniProtKB-KW

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06005
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.34|      16|      17|      14|      29|       1
---------------------------------------------------------------------------
   14-   29 (28.93/19.51)	HSSHVPLFIRELLGEA
   33-   48 (30.41/20.86)	HSEAADLWGRPELGRA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.70|      10|      17|     181|     190|       2
---------------------------------------------------------------------------
  181-  190 (18.28/13.14)	VPVRFKLSPD
  201-  210 (17.42/12.13)	VRSRFEFSKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.85|      15|      17|     114|     128|       3
---------------------------------------------------------------------------
  114-  128 (27.55/15.76)	YYAYTFTVDTSFKEY
  134-  148 (26.30/14.78)	FFAVGFSVYSQLTLY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     157.93|      49|     101|     341|     391|       5
---------------------------------------------------------------------------
  341-  391 (84.30/60.84)	VPTKIIDLNGMETFTSQYSVTHkrRIIDHDQGSHGS.CGIFIYFD.FAPMMVL
  445-  495 (73.63/46.95)	VPVKTRHIEADEIKTTAEVATH..RLIEAARRSERHfVRLYALFSaYCPEEVL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06005 with Med28 domain of Kingdom Metazoa
Unable to open file!