Description | Mediator of RNA polymerase II transcription subunit 23 |
Sequence | MSVSLSDFEAKVKNLFKEHAKSGIAHFFFRPYLITSSEECEKEIVISTANELMEIFTSLPQNLQESAFSIVISHRVLSNSANKIVDFFVRNVIQRQMLSIKCICEKLLTCAELNINSCGWNDTFAFFMENISLLDYKGVRDTLKRLLDIPIPVHLQVDQRKSVEAVEKLIKTICDRKNNLLPAYFVITEIIKNLPEQRCFSHWRMADCFTEIIESFRPLAQLNSVCGRTFMTPIPGHVGFYFNAFWKLEALSLRFPLKGLLPYSQDLLNPQMRLLTHVFMHYTYRDAIAVLLGTAKPEKSRIPYFEEVITEIILELMFTAECDHSQLNPQAWRIISTQIIYLTLQQSICFTRLVKILHTKLTHYPYRYARNQLMWCLFNFLSGGMQKYSVEEFAVILDLYRLLYTGRDIFTVSGSDSSCVLMLAPTCIWIHILKKSPSMEVELPPTVNTQRKFLQEALKNKTQFNTDNYMVAVLCNAYSSTSEIFQQDLLPILLENLDNTRGHNSTQASGNFASNTTSSMPYPNGAVSEVKLRPLKLEFLDSVSVHVRMNIANSLIGTFGRFMQGKSAWPSPALVETYCRMLTYPDLEILGLKQFTSHIVLTAARHQCCEMMYICCEILNYRLFNIPSTYRVHAIVTLQQTLAFAKFQTNASLYWMLERTLLLQFQWYPHYEIFQAPFARLLNSFVAVAADGTKQSIAENEELMRIIILTLARSTVISSNSDSCFIEGVYRELLNKLPSYSWPQSTLSVFPQQQPQQPQQQQQQQQPQPQQSNVVVGSSQQPQQQQQSRFLLKQQVDEEYIKHRTFGSELSLIDYFTNTSTSTVYLCLLWRLVYDTGELPAVSMKILEVLGPRKVLVHLKSLADFLVYETNSADVNRCVDVLNRLIFKYAVVPLERFMLTMLLRDYEGNDAFYALLIVMLLVQRSEELRSAVADCVAMLPSDYWHCQDWNDKYQAYQIKHAERTWSQVYVELSRASLTPNDCPLPVYFGTRCLQMLPVVDLLLQKLVESPAACLKFLDSTLSILGPLYRFHPYPVSFLYSTFRFYEKRLVESPAIKQKLALAVHGACVPSRDDHWLLSAEFVGWVGQATDRGPWVPDLNYYGALVRRLIDTFSEPRQQWSRKTDLRFVEFNNFQTHALYSICIELMSLPVGVVDVGNALVTLVTHWHSLVDKNTLMYWVNAIGLIFSALPISYMEPFYQTILTTLCSDNMNSINTDVSNKLDFEKRSKLMEDCYPARILALCHAVWLHSTSGYLQLLPQALRSTWIPHVRSEGQFLYVCHLVAPFLQRFYQERTKFTMDITTDLYQMLYNVDCEVGNWKYEDLICDFFYHVKYMYVGDSVRQDTDRIIPMLRPSLQQKLRYISFAQGEQSAGTPFSEMINPIKLLGIQMVVWLQRLPIFGETAQHFWLAVTKLGDPVMTFSLYFPALFPFFGTAALDMVIVGAFSEISNCILKWILLDDRPYWWVHTAGVSGQLSHPLKQFQWTCETGPGSPSGHAMVSASVWFNLLYNLQSDLVLGDLCGICWLLYVVFLIAVSISRTYISAHFPDQVILGIVVGICIALVTRSLVGHRRRRWSNLIAFMIALLLIALSVHEVHRFFGVDTHRSIELAAKYCHRAEWIHLSTTPLASFFRDVGVLISVAILLANKSMFTNNNKIASKFFSTKFAQALLGVSLNQLVAFIPIGRLPTALFYAVLLPALIVLLLTMVLDLDNFRVEKGGNVQAVRVSQQKRFQSVDLVDQVVETDQEWRRSRYLSDEWNRLKNLCSKEIGEKIKRKEPVDGNSTLPDSLTDKLQKLTVDQIRALSVGQIKQLRLLIDHEMEKSYKLVENLEAVRFKALSQIGNLVHNSVPVSENEDDNEIVRTWGELEVRKKYSQVDLGIMVDGYDSERGCSVAGSRGYFLKGPLVFLEQALIQLAMHMLFKKKYTPLYTPFFMRKEVMQEVAQLSDFDDQLYKVIGKSSEVKEEIAEEEKYLIATSEQPIAAYHRDEWISKESLPLRYVGFSTCFRQEVGSHGRDTSGIFRVHQFEKVEQFCITSPHDDASWEMLEEMISNAEMFYQTLNIPYRVVSIVSGELNNAAAKKYDLEAWFPGSGAFRELVSCSNCTDYQSRRLRIRYGQTKKMMAKAEFVHMLNGTMCATTRTICAILENFQEENGIAVPEALRQYMPDDYKDFIPFVKPAPKVEQAAKRGGNKSATAEKSTQ |
Length | 2200 |
Position | Tail |
Organism | Trichinella sp. T9 |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella> unclassified Trichinella. |
Aromaticity | 0.11 |
Grand average of hydropathy | -0.019 |
Instability index | 42.85 |
Isoelectric point | 6.91 |
Molecular weight | 252373.08 |
Publications |
Annotated function |
|
GO - Cellular Component | integral component of membrane GO:0016021 IEA:UniProtKB-KW nucleus GO:0005634 IEA:UniProtKB-SubCell |
GO - Biological Function | ATP binding GO:0005524 IEA:UniProtKB-KW serine-tRNA ligase activity GO:0004828 IEA:UniProtKB-EC |
GO - Biological Process | seryl-tRNA aminoacylation GO:0006434 IEA:InterPro |
Binary Interactions |
Repeats | >MDP05996 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 78.23| 22| 29| 744| 765| 1 --------------------------------------------------------------------------- 744- 765 (42.97/30.04) QSTLSVFPQQQPQQPQQQQ...QQQ 771- 795 (35.27/23.17) QSNVVVGSSQQPQQQQQSRfllKQQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 155.41| 47| 80| 892| 941| 2 --------------------------------------------------------------------------- 892- 941 (77.00/55.42) VPLERFMLT...MLLRDYEGNDAFYALLIVMLLVQRseeLRSAVADCVAMLPS 970- 1019 (78.41/49.13) VELSRASLTpndCPLPVYFGTRCLQMLPVVDLLLQK...LVESPAACLKFLDS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 152.86| 33| 80| 1404| 1440| 3 --------------------------------------------------------------------------- 1404- 1440 (53.93/34.39) QHFWLAVTKLGDP....VMTFSLYFPALFPFfgtaALDMVI 1480- 1516 (50.40/24.06) QFQWTCETGPGSPsghaMVSASVWFNLLYNL....QSDLVL 1521- 1550 (48.53/22.91) GICWLLYVVFLIA....VSISRTYISAHFP.......DQVI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 68.58| 20| 21| 1555| 1574| 4 --------------------------------------------------------------------------- 1555- 1574 (35.84/24.64) VGICIALVTRSLVGHRRRRW 1578- 1597 (32.74/21.83) IAFMIALLLIALSVHEVHRF --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 57.72| 15| 80| 273| 287| 5 --------------------------------------------------------------------------- 273- 287 (28.85/18.94) RLLTHVFMHYTYRDA 355- 369 (28.86/18.95) KILHTKLTHYPYRYA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 128.98| 38| 812| 1265| 1371| 6 --------------------------------------------------------------------------- 1094- 1131 (69.83/21.19) WVPDLNYYGA......LVRRLIDTFSEPRQQWSR..KTDLRFVEFN 1265- 1310 (59.14/140.59) WIPHVRSEGQflyvchLVAPFLQRFYQERTKFTMdiTTDLYQMLYN --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 149.13| 46| 812| 1324| 1371| 7 --------------------------------------------------------------------------- 1324- 1371 (78.97/59.25) IC...DFFYHVKYMYVGDSVRQ....DTDRIIPMLRPSlqQKLRYISFAQGEQSA 2141- 2193 (70.16/46.16) ICailENFQEENGIAVPEALRQympdDYKDFIPFVKPA..PKVEQAAKRGGNKSA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 134.32| 41| 82| 112| 154| 9 --------------------------------------------------------------------------- 112- 154 (70.66/49.28) ELNINSC..GW..NDTFAFFMEniSLLDYKGVRDTLKRLLDIPIPVH 193- 237 (63.66/38.35) NLPEQRCfsHWrmADCFTEIIE..SFRPLAQLNSVCGRTFMTPIPGH --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 60.87| 16| 29| 579| 595| 10 --------------------------------------------------------------------------- 579- 595 (26.75/19.85) CRMLtYPDLEILGLKQF 609- 624 (34.12/20.93) CEMM.YICCEILNYRLF --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 81.40| 27| 29| 49| 77| 11 --------------------------------------------------------------------------- 49- 77 (39.31/36.16) ANELMEIFTSlpQNLQESAFSI.VISHRVL 81- 108 (42.09/30.41) ANKIVDFFVR..NVIQRQMLSIkCICEKLL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 51.20| 13| 33| 1194| 1206| 13 --------------------------------------------------------------------------- 1194- 1206 (25.37/17.74) MEPFYQTILTTLC 1230- 1242 (25.84/18.24) MEDCYPARILALC --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 57.56| 17| 26| 1927| 1943| 14 --------------------------------------------------------------------------- 1927- 1943 (30.62/18.83) LYTPFFMRKEVMQEVAQ 1951- 1967 (26.93/15.70) LYKVIGKSSEVKEEIAE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 52.46| 18| 26| 291| 313| 15 --------------------------------------------------------------------------- 291- 313 (25.93/30.97) LLGTAKPEKS.......RIpyfeeVITEII 316- 340 (26.52/15.50) LMFTAECDHSqlnpqawRI.....ISTQII --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 86.42| 25| 624| 1447| 1474| 19 --------------------------------------------------------------------------- 1447- 1474 (41.64/39.57) ISNCILKWILLdDRPYWWVHTagVSGQL 2049- 2073 (44.77/29.56) ISNAEMFYQTL.NIPYRVVSI..VSGEL --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) DYKDFIPFVK 2) PKVEQAAKRGGNKSATAEKST | 2167 2179 | 2176 2199 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab