<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05990

Description Dynactin subunit 4
SequenceMYKPERPDIKFTIAEVNNSVRRSKSIGQYHTILNNTFCRSCGVTMVRKIYPMNQNQSSTVSVPVELAEVTVMQGLRAVRDLRQSMSRLFDTLKDIRETPVTDEKAEESDLWLNFKSTLQKIMDNFEILEKCAVSLSKQPVQFLHPNLNQQIRSYCTDEAQIYPDIVYVYGWVKRIRESAQWLYNFVSQMSRRSQSRCLRKVFLPVFLQVNLTFLSHLFPMIQRQFPGVHIFSLPLGRSVFMLLTSAVDALRGPCTIFKVAILLRGLQIEWANVKGPEELNQNCLEKGDIYKPSQYIVFQKMTENVKCMIAQFNSSYSNLQLPQTLIRQFFFSHAAVMSTLYDIQRTLYFCSCQRWLPLCELYFCKHCICFRCYNCAKPEVDSIFCAQCMENRSIAEARATKNRCEICCDCPVCGAKLEIRVKCGNANSGDLKSNENESEKNNNKQFRLQCFTCMWSSLEAGIPDDKSIIEKCNQPEPPYAKELKSIMERFRQMARMEKLQIERKKFMPKRLSLFQFHPDKFPMHDFLTKQQMSTSLESFSPLYESSEDVEPLDSSVFVNSFFVSDGNLWLLTSMEQRLRQPLLQPRYVKDLLPVKKQLLVKQSLRCPQCDHNISKGEYVPESIKFKINYSAPLIVPELRLAEQVDFKLNEETKVIITITNGSLMDVALFLLPDASENENIKVSLPIGEISVPKFVYSTPFSEESQESPKDETEGVVKRCGNKVFIEIMVTVQKNITPVTLSLILKHHHVGNVRLTEGEAEWLEHRVRMKLSDDVKLS
Length777
PositionTail
OrganismTrichinella sp. T9
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella> unclassified Trichinella.
Aromaticity0.09
Grand average of hydropathy-0.272
Instability index54.78
Isoelectric point8.53
Molecular weight89827.20
Publications









Function






Annotated function


GO - Cellular Component
dynactin complex	GO:0005869	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05990
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     115.22|      33|     230|     381|     419|       1
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  350-  379 (49.39/20.79)	CS.CQRWLPL......................cELYF...CKHCI...CFRCYNCAKPE....
  381-  404 (33.77/13.16)	.................................DSIF...CAQCM...ENRSIAEARATKNRC
  410-  472 (32.07/24.60)	CPvCGAKLEIrvkcgnansgdlksneneseknnNKQFrlqCFTCMwssLEAGIPDDKSIIEKC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     276.39|      91|     527|     105|     212|       3
---------------------------------------------------------------------------
  105-  212 (136.98/169.97)	AEESDLWLNFKSTLQKIMDNFEILEkcaVSLskqpvqFLHPNL..NQQIR.SYCTDEAQIyPDIVYVYGWVKRIRESAQwlynfvsQMSRRSQSRCLRKVFLPVFLQV..NLT
  641-  736 (139.40/118.79)	AEQVDFKLNEETKVIITITNGSLMD...VAL......FLLPDAseNENIKvSLPIGEISV.PKFVYSTPFSEESQESPK.......DETEGVVKRCGNKVFIEIMVTVqkNIT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05990 with Med27 domain of Kingdom Metazoa
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