<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05958

Description Actin-interacting protein 1 (Fragment)
SequenceLNFYHLEKKMNYHLENVFAALPRTTRGMPMVLNGDPKGNNFLYCNGNSVVIRDLENPKISDVYTEHSTLTTVAKYSPNGAYIASGDKSGKIRIWDTTQKEHILKKEYQPLPGAVRDIGWSEDGQRLAVVGDGREKFGHVFLFETGTSNGTLCGQTKALNSVDFRPVKPLRIVCASEDNSTAIFEGPPFKFKTLNYNHSRFAQCVRYAPDGQLFASCGADGKVFVYEGLEGSVVKEFVDPACKGKAHDGSAYALSWKSDGRQLLTASADKTCKIWDVETGNVVNLFLHRSILSTFKFGNSIDDQQLACLWQGDYLLSVSLGGCINYLDVNNPNKPRMIIKGHNKPITALAIDPSRDTVFTGDMEGKIVRWKESSGQAEEFTHQGHKSQVQSMVCTLSTLISVGMDDMLACSQQDDSNSHWSVKLGSQPQAVAVREGDPKLIAVACLNEVLLYNGSSLSARQTINYEASAIAIHPTENLLAVGSADNKIRLYEFSDAGSMQMLKEETHLGAITSLRFSIDGKYIAVADATRRLIIYTAKTLEVVVRAVKNDWTFHLAKINCLAWCPDSRHIATGSLDTNIIVWDMENAGEHPLIIRGAKAARAHKMSQITNIEWWNNNTLVSTGQDANVKLWKISF
Length634
PositionTail
OrganismTrichinella murrelli
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.09
Grand average of hydropathy-0.262
Instability index28.56
Isoelectric point7.06
Molecular weight70088.78
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05958
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     299.12|      49|      89|      83|     133|       1
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   83-  130 (75.84/54.93)	.ASGD...KSGKIRIWDT........TQKE..HILKKEYQP.LPGAVRD.....IGWSEDGQRLAVVG
  131-  170 (16.22/ 9.83)	D....greKFGHVFLFETgtsngtlcGQTK..ALNSVDFRP.VK.PLR....................
  174-  217 (59.45/41.14)	.ASED...NSTAI.FEGP........PFKF..KTLNYNHSR.FAQCVR........YAPDGQLFASCG
  219-  262 (40.37/25.77)	D.........GKVFVYEG........LEGS...VVKEFVDPaCKGKAHDgsayaLSWKSDGRQL....
  265-  309 (62.61/43.80)	.ASAD...KTCK..IWDV........ETGN..VVNLFLHRS.ILSTFK......FGNSIDDQQLACLW
  482-  524 (44.64/28.69)	..SAD...N..KIRLYEF........SDAGsmQMLKEETH...LGAITS.....LRFSIDGKYIAV..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     158.21|      46|      48|     534|     581|       2
---------------------------------------------------------------------------
  535-  581 (77.27/63.07)	TAKTLEVVVRAVKNDWTFHLAKINCLAWCPDSRHIATGSlDTNIIVW
  585-  630 (80.94/55.44)	NAGEHPLIIRGAKAARAHKMSQITNIEWWNNNTLVSTGQ.DANVKLW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.39|      32|     398|      31|      62|       3
---------------------------------------------------------------------------
   31-   62 (58.74/40.34)	VLNGDPKG......NNFLYCNGNSVVIRDLENPKISDV
  432-  469 (48.65/32.17)	VREGDPKLiavaclNEVLLYNGSSLSARQTINYEASAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.94|      23|      40|     339|     363|       4
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  339-  363 (34.72/23.38)	KGHNKPITALAIDPSrdTVFTGDME
  382-  404 (39.22/20.59)	QGHKSQVQSMVCTLS..TLISVGMD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05958 with Med16 domain of Kingdom Metazoa
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