<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05951

Description F-box-like/WD repeat-containing protein TBL1XR1
SequenceMATGEGENCSALPSDELNIGFDEDENCSTPPSSEHNRGFDEDANCSTPPADEHNSKFDEDEDCSTPRSAEHNSEFDEDADCSTPTLAEHNIGFDEDEDCSTPSLSEFDSEFDVDSDCSTPTSVLSPFPEDQLNFLIWRFFKDHGYHVTAEMFAEDNAVEENCGVEDLSICKGSLKKLLEMLHFKSIVDGDIPQDGNLYDLVPGECFLSESSSSTTETASVDNSSEDSSFTAVELKCIMCTNYNSSICSLDWSFEEDLLLTGSADKVVRLWNMKDEKGETKNSYREITCFEDENNGVNLPVSNGVVLVSWSPQGDLIASADSRGKIRICKKDGNFTINCFNVPEDIAILKWNVTERLLLTATVDGVISLWSARTGDCVGCFTPFEDDVTDADWKDGATFTACSKDGMLFHCCITSTDASGPFNGHENSINVIKWDPTGNMAATGSSDMMVKVWRFGNEECVGCLKGHTAEVNTLGWHSTDQAILASGSEDGVVCVWDVINAEMLHMLNGHMTPLRMVAFRPETDMLISCSSDSVICLWNGRNGKRLRKIGNGDRATVNVMMWNRSGQVIAVGRQDGTASMETEETNVPEPVVVPSRRRIPTLRMESPIRAEDLHYLVWRFLKDTGQHRIAKQFELESQVLCSTLDSELPYVCFGSMEILMDALHKKCVQDGDIPEMGSLLELVPATLYHPSEDALSPDTDSSRSDSPFDHMLQITDIRPINTCKWGIKVLKILSKVGHNSDVSNCAWNPKEDFLLTGSVDKIVHLWNLENDITNVDENCVLASLDLTTLQVTDCRHLLPDLTFVAWSPDGDTAASVGLAGQFCIWKRDGSFLFTCTHPTHSILLLKWSTDGKHLLTASSNGIIVIWTASTGEIYADYGPFSTSVTDADWKDDSTFSVCFDNGTLFHCSPTDPFVMSTFEGHQMRVNMIRWDPAGKMMASCSDDRLVRIWRLNSQTYDFSLCGHTAEVDVLCWHDTDRAILASGSSDQSVRVWNVNRGEILYVFSFHTSPICTLEFRPGSDILASSGLDNRIMLWNVKVGGMLNEIENDDQKRIYELAWNRNGEKLAIAKADGLLYLGIEFYNHQSSSNIDLYDSSRQYRTTHRIIFLHSCDAHYDMFNSSFQILHMQYSP
Length1129
PositionTail
OrganismTrichinella murrelli
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.08
Grand average of hydropathy-0.305
Instability index42.85
Isoelectric point4.53
Molecular weight125721.97
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05951
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            14|     669.65|      40|      40|     419|     458|       1
---------------------------------------------------------------------------
  242-  276 (44.59/19.19)	..Y..N...S.....................SICSLDWSFEED.LLLTGSADKVVRLWNMKDEK
  296-  334 (40.85/17.00)	VNL..PV.SN.....................GVVLVSWSPQGD.LIASADSRGKIRICKKDGNF
  337-  375 (49.97/22.33)	NCF..NVPED......................IAILKWNVTER.LLLTATVDGVISLWSARTGD
  378-  416 (47.53/20.90)	GCF..TPFED.....................DVTDADWKDGAT.FTACSKDGMLFHC.CITSTD
  419-  458 (62.20/29.47)	GPF..NGHEN.....................SINVIKWDPTGN.MAATGSSDMMVKVWRFGNEE
  461-  501 (53.18/24.20)	GCL..KGHTA.....................EVNTLGWHSTDQaILASGSEDGVVCVWDVINAE
  504-  543 (56.48/26.12)	HML..NGHMT.....................PLRMVAFRPETD.MLISCSSDSVICLWNGRNGK
  736-  771 (45.39/19.65)	......GHNS.....................DVSNCAWNPKED.FLLTGSVDKIVHLWNLENDI
  772-  829 (36.32/14.36)	T....NVDENcvlasldlttlqvtdcrhllpDLTFVAWSPDGD.TAASVGLAGQFCIWK.RDGS
  830-  871 (43.23/18.40)	FLFtcTHPTH.....................SILLLKWSTDGK.HLLTASSNGIIVIWTASTGE
  874-  912 (40.54/16.82)	ADY..GPFST.....................SVTDADWKDDST.FSVCFDNGTLFH.CSPTDPF
  915-  954 (52.05/23.54)	STF..EGHQM.....................RVNMIRWDPAGK.MMASCSDDRLVRIWRLNSQT
  957-  997 (53.37/24.31)	FSL..CGHTA.....................EVDVLCWHDTDRaILASGSSDQSVRVWNVNRGE
 1000- 1038 (43.96/18.82)	YVF..SFHTS.....................PICTLEFRPGSD.ILASSGLDNRIMLWNVKVG.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     236.25|      17|      17|      20|      36|       2
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    5-   18 (20.26/ 7.10)	...EGENCSALPSDELN
   20-   36 (41.75/22.49)	GFDEDENCSTPPSSEHN
   38-   54 (39.84/21.12)	GFDEDANCSTPPADEHN
   56-   72 (38.61/20.24)	KFDEDEDCSTPRSAEHN
   74-   90 (37.94/19.75)	EFDEDADCSTPTLAEHN
   92-  108 (35.84/18.25)	GFDEDEDCSTPSLSEFD
  110-  122 (22.01/ 8.35)	EFDVDSDCSTPTS....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.17|      29|      63|     128|     160|       3
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  130-  158 (55.50/44.75)	DQLNFLIWRFFKDHGYHVTAEMFAEDNAV
  610-  638 (53.67/29.04)	EDLHYLVWRFLKDTGQHRIAKQFELESQV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     207.92|      58|     478|     162|     229|       4
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  169-  229 (100.05/76.25)	ICKGSLKKLLEMLHFKSIVDGDIPQDGNLYDLVPGECFLSESSSSTTETasvDNSSEDSSF
  650-  707 (107.87/61.70)	VCFGSMEILMDALHKKCVQDGDIPEMGSLLELVPATLYHPSEDALSPDT...DSSRSDSPF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05951 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MATGEGENCSALPSDELNIGFDEDENCSTPPSSEHNRGFDEDANCSTPPADEHNSKFDEDEDCSTPRSAEHNSEFDEDADCSTPTLA
1
87










Molecular Recognition Features






MoRF SequenceStartStop




1) CSALPSDELNIGFDEDE
9
25