<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05942
Description |
Mediator of RNA polymerase II transcription subunit 13 (Fragment) |
Sequence | LLCEMSHVNLNSTNGASLEDCHTNVFVLVTMLKIFSMRMRSFTELNGLKWCRWCCSNSSIVYADIPDDAVLCGYGRCVTQGFLCVWRRAPPVHSSNRVDLRLAVEKELWIFWYGDEPDWALLCTGLTKIEEGSWEKGVEYETRTMLFKALHNQIDRVLLNANFLRFGNWYVNPLNYPKTKNKSNRPKYVIAFSLSFFVHGENNVCVTVSVQRHVPVYRLCRQLMLANRKLPVLLSPWSLSGELVFDPDKASESGESQFQQQLWKDWCRFYASLDSGGAESTTGVGSGSPFKEANSSSTTTTTTTDKLPKMMDVFVCGVRLKVPTRFVCVVDPDNVASSPQQSGSLLAGFRQWLCEKTMENLICHQRRQSGPTSPSAGESDSFGLAGSWNIVDPGQRERCCCSVGQSTSCCGTGAAGSVRFTSKCKSSDVSPKRVGCFHRRVAASRKLMTSAGLDGSSTAAGDDDDQQHQTMVEEAGTSTTSALLNSTTTATATVTATAASTASAAAAAAAPVASAVCSSASMTSSTMFLDHCSANVVGCNVAVEPKSKMRRSVEQSELLQQQQTPDPLVIPPKYTGLESIEVDQRLLSMKRRYNVSTNYDTDGDLQLMKLSFSRYHSHHQEQIHLLHIQQQQQQQQQQNQSNSFISRVSSSSVKNFGKPTDQFTEKFYRALTSYSWCQAMETNRKRRFFVQNVLLLFSEAVLNCRSIAPVGQRHLAQSNARQVEKIYGYKNKNKRKDITTNDHDRTDDVLSGDMCKREEEKACVKSDAEFHMTDDSSAIVHHQMMEEGPSPSSGISDCENEIHAFLSPPPSLGTEEERLNATEKIVAVKMDATNQNNEHANSSSSSNNNNNNNNNSSSTTTTNSNNVAVLSCSQRSSASSAYPSSTQVVAVAGAVVDHLGIIYPTPPSQEALQQLSPESHAGTGTTAVAGTQTGACSSGSYGQGSTMKAASYLSGYRDCKDAPEVQVVIPYVLASEFFGAVPASSRRSAVRFEKILCYKPSRLLPALYHHHHHHHHHHHHHHHHHQSASVGHLASLPTYGLGAISHHSWSNCGSFGSWFGSSSVRLGSQASIGLDSSSSATGRSIISAPASVRSVAEPSPVNNNPPSVSSPHFVRTPRTPGMELASPMSNASSAYAKNLSSIEPASSVLHPEGHSLVMMLLLSDTFVHLYRDSNFDSCPLCVCNMNIRGLEMGHYVNLRRCDDNMSVLYHSSARNTFTNKCTCGFSASRHRYLSYKSGVFYEDEDDATGAVWERLTASHLETVPFSREIVELVRHQSLLQDLTCSLMLFRTSPFGCLNAEASGAIGGGGGGGGGGGGGGSLSTSLLSVTSSSWSMFDDVEKNIPLGLPNAVYNAVELRDFTELCQLALEQSMLSLDCNNVALYVEQVPAAKRSATSSYINGWGYAKTVEPSNSLETMALLRSLLPLLQESLQKPRGLWQAKHSVEGPLTWRQLHRKCTHRPGSNGREDLSGPEPIPELLVCSDRDWIQVSPFSIRLWDRMCLEPFTQPKDVAFIAVVPDTQYVVRKARGFFRELSRTYEGMRLGRHCPITRVLKDGIMRVGKTHAKQLDQKPVDPWFDRFESASDGRNIIGAKLKLYAQVCRHYLAPHIFSPVWNAFDRSIFREIGRECPASTPTTTCTSSSLSNVDSVGTAVSSQSAELANTTVSASGSGASCVSAGTTGMTTTTTTATAVTTSVADSSSSTAISYGLNNNNNNNNNTNNSSNNSMNMMNTSSSNNSNDSRMSESSTNGNDNNGLLSPTSDGPNFPHVVVIYLVNPFNFGPDDQHVRDLNRLVTTGLFRCYLEILQEVPATFRSSMQLQIIPLQTVLDTSLLDDWELQHNGIVDEDRRLKSMPRAAVNSNSSSVGGGIGQQRVSLSSSTHLRSLALNVFMQIRSVAYSCLHSCLPKVMTGFGPAASRHELLRRKQNSAGFRLYSAPVVLAPIQDRTSCLNGTTGSNGSFGSSSSNSASSFCGGGSESRDDHGQVLFLAYCLSAKQQWLLCTVTDQQGAVLDSCVINMMLNNRHNVVKRELIWSALRRLWDYVVGILASSCRPWRIVIGRLGRLGHEELKAWAHLLSKSQLRSTSRLLREQCAVCQPMPTIFETPAILSACLISTELDPNMRIFPDSFVHDDRFGQGAKQCPLSSPEDVSSSHIMVFPTSALIQISQCCIMTGGLPGADETDGDFESIWKDLMISPEGDGLESGLNDIFGSMSEANLMNDSTVGFDANSSHTRGLAISESSDESIQLQPLALGFLVSTAPTGPVPEWFWTVRPSARDLLPVHLRSALHIHTSGVQQSDDHLLASGANRSTSGTVHPLDSSLTTDVLRYVLETYNALSWLCLDFRTGDRVSCFPLHIQALSRLYRAMDALL |
Length | 2370 |
Position | Middle |
Organism | Trichinella murrelli |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia>
Trichinellida> Trichinellidae> Trichinella.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.300 |
Instability index | 50.89 |
Isoelectric point | 6.73 |
Molecular weight | 258986.05 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP05942
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 47.43| 12| 19| 1024| 1035| 2
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1024- 1035 (21.67/ 9.13) HHQSASVGHLAS
1046- 1057 (25.76/12.27) HHSWSNCGSFGS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 136.97| 41| 542| 936| 1004| 3
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937- 979 (69.71/65.21) SSGSYGQGSTMKAAS........YLSGYRDCKDAPevQVVIPYVLASEFFG
1733- 1781 (67.26/20.83) SSSNNSNDSRMSESStngndnngLLSPTSDGPNFP..HVVVIYLVNPFNFG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 50.07| 14| 44| 1626| 1639| 4
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1626- 1639 (28.49/18.14) GREC..PASTPTTTCT
1671- 1686 (21.58/11.47) GASCvsAGTTGMTTTT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 103.53| 23| 44| 1321| 1344| 5
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1321- 1344 (33.06/21.87) LSTSLLSVTSSSWSMFDDVEKnIP
1368- 1388 (35.01/18.58) LEQSMLSLDCNNVALY..VEQ.VP
1390- 1410 (35.46/18.92) AKRSATSSYINGWGYAKTVE...P
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 87.05| 18| 542| 1293| 1310| 7
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1293- 1310 (35.18/17.51) PFGCLNAEASGAIGGGGG
1854- 1870 (30.98/14.44) PRAAVNSNSS.SVGGGIG
1960- 1975 (20.89/ 7.07) .FGSSSSNSASSFCGGG.
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 120.77| 35| 861| 832| 866| 8
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832- 866 (64.13/34.98) ATNQNNEHANSSSSSN.....NNNNNNNNSSSTTTTNSNN
1689- 1728 (56.64/30.00) ATAVTTSVADSSSSTAisyglNNNNNNNNNTNNSSNNSMN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 68.15| 23| 542| 1495| 1545| 10
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1495- 1545 (21.90/46.24) RLWDrmclepftqpkdvafiavvpdtqYVVrkarGFFRELSRTYEgMRLGR
2038- 2060 (46.25/30.45) RLWD.......................YVV....GILASSCRPWR.IVIGR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 47.82| 10| 215| 50| 59| 14
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50- 59 (25.82/12.78) WCRWCCSNSS
266- 275 (22.01/ 9.78) WCRFYASLDS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 67.11| 19| 53| 62| 81| 16
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62- 81 (33.22/27.11) YADIPDDAVLC.GYGRcVTQG
113- 132 (33.88/21.07) YGDEPDWALLCtGLTK.IEEG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 71.46| 23| 54| 1074| 1098| 20
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1074- 1098 (34.31/27.66) LDSSSSATGRSIIS.APASvrSVAEP
1128- 1151 (37.15/22.98) MSNASSAYAKNLSSiEPAS..SVLHP
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|