<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05939

Description Mediator of RNA polymerase II transcription subunit 24 (Fragment)
SequenceLYLRIPRLLSQLVAEGIPKETLIGSLRRIATSEAVLNVSDTKARCNTLQAFLNVLSELGILEESEKDTLMAIRDEMRKELYVQEGQPTINLVLRAEFTLQSIVKAFDAHQALERWPQMLNTMMSGKSLLYICAAAISIDQLNLLAERLIKITETYKEVVPVGEDAQKSVPPSHDLFDMSFLLLHRLSQYYSTTTCLRPGDPFFKTWYFSSAIDLVRNMFDPEDLPQLLKNVPLDLELATDVLSRLRVGQPGWLNIRTWYCIIDMIPSIVQVVLNEVLLDTISIEELKHIFSGLLFLNIHGVSCMCSPLLCFAQYVALQKTDEATKLASSLFSFFESITPSDAERNRQTDRQTFMVNSAKKLFSTYRELPVTLMHVLRMNRAPAQLNHSPDDHFPVIGKPENIRSFFAASERAGYLTAALIARIIVLVESEQYDSWLSAFIEALQKVNTMQGMEKWCNLNLACCFIRPKECTLALIPLLSNYVLHDDRDLFCVAPRGNILAFFLVKLYLIALRYTTPTAVEKAETTEFSVDECSVQNNANSSTADRSAVITSLRELFSCKFEVVRSGELCPTVAFVSNFLYCLSEYSTPEAELIKNEIPMHLIFSLLRADPDILSMRTVLRLFDLKGEIQRRKALQIAFLLKRKKHL
Length646
PositionTail
OrganismTrichinella murrelli
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.09
Grand average of hydropathy0.091
Instability index46.30
Isoelectric point5.99
Molecular weight73385.55
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05939
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.46|      32|      48|     196|     234|       1
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  196-  234 (48.88/47.51)	LRPGDPFF...KTWYfsSAIDlvrnMFdPEDLPQLLKNVPLD
  245-  279 (57.58/34.12)	LRVGQPGWlniRTWY..CIID....MI.PSIVQVVLNEVLLD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     361.41|     121|     325|      61|     194|       2
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   61-  194 (182.69/190.39)	LEESEKDTLMAI.RDE.MRKELYVQE..GQPTINLVLRAEFTLQSivKAFDAH.QALERWPQMLNTMmsgKSLLYICaaaisidQLNlLAERLIKITETYKEVVP.....VGEDAQK..SVPPSHDLFDMSFLLLHRLSQYYSTTT
  385-  517 (178.72/148.56)	LNHSPDDHFPVIgKPEnIRSFFAASEraGYLTAALIARIIVLVES..EQYDSWlSAFIEALQKVNTM...QGMEKWC.......NLN.LACCFIRPKECTLALIPllsnyVLHDDRDlfCVAPRGNILAFFLVKLYLIALRYTTPT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.03|      42|     584|      11|      52|       4
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   11-   52 (70.30/51.66)	QLVAEGIPKETLIGSLR...RIATSEAVLNVSDTKA...RCNTLQ.AFL
  591-  639 (56.73/40.20)	ELIKNEIPMHLIFSLLRadpDILSMRTVLRLFDLKGeiqRRKALQiAFL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05939 with Med24 domain of Kingdom Metazoa
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