<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05913

Description Actin-interacting protein 1 (Fragment)
SequenceLNFFYLENKMNYHLENVFAALPRTTRGMPMVLNGDPKGKNFLYCNGNSVVIRDLENPKISDVYTEHSTLTTVAKYSPNGAYIASGDKSGKIRIWDTTQKEHILKKEYQPLPGAVRDIGWSEDGQRLAVVGDGREKFGHVFLFETGTSNGTLCGQTKALNSVDFRPVKPLRIVCASEDNSTAIFEGPPFKFKTLNYNHSRFAQCVRYAPDGQLFASCGADGKVFVYEGLEGSVVKEFVDPSCKGKAHDGSAYALSWKSDGSQLLTASADKTCKIWDVETGNVVSTFKFGNSIDDQQLACLWQGDYLLSVSLGGCINYLDVNSPNKPRMIIKGHNKPITALAIYPSRDTIFTGDMEGKIVRWKECSGQAEEFTHQGHKSQVQSMVCTLSTLISVGMDDMLACCQQDDSNSHWSVKLGSQPQAVAVREGDPKLIAVACLNEVLLYNGSSLSARQTINYETSAIAIHPTENLLAVGSRDNKIRLYEFLDAGSMQLLKEETHLGAITSLRFSIDGKYIAVADATRRLIPYTAKTLEVVVRAVKNDWTFHLAKINCLAWCPDSRHIATGSLDTNIIVWDMENAGEHPLIIKGAHKMSQITNIEWWNNNTLVSTGQDANVKLWKISF
Length620
PositionTail
OrganismTrichinella nelsoni
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.09
Grand average of hydropathy-0.256
Instability index28.84
Isoelectric point6.63
Molecular weight68600.14
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05913
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     300.40|      38|      42|     243|     280|       1
---------------------------------------------------------------------------
   75-  115 (22.49/ 8.78)	.......YSPNGAYI..ASG..DKSGKirIWD.................ttqkehilkkeyQ..........PLPGAVR
  116-  156 (43.08/23.37)	DIG....WSEDGQRLAVVGDgrEKFGH..VFLFETGT..........sN............G..........TLCGQTK
  157-  202 (24.09/ 9.91)	ALNsvdfRPVKPLRIVCASE..DNSTA..IFE...G..........................ppfkfktlnyNHSRFAQ
  203-  251 (45.59/25.14)	CVR....YAPDGQLFASCGA..DGKVF..VYEGLEGSvvkefvdpsckG............K..........AHDGSAY
  252-  296 (48.60/27.27)	ALS....WKSDGSQLLTASA..DKTCK..IWDVETGN....vvstfkfG............N..........SIDDQQL
  297-  337 (41.88/22.51)	ACL....WQ..GDYLLSVSL..GGCIN..YLDVNSPN......kprmiI............K..........GHNKPIT
  459-  502 (40.59/21.60)	AIA....IHPTENLLAVGSR..DNKIR..LYEFLDAG.....smqllkE............E..........THLGAIT
  550-  575 (34.08/16.99)	CLA....WCPDSRHIATGSL..DTNII..VWDME.............................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.05|      18|      37|     363|     380|       2
---------------------------------------------------------------------------
  363-  380 (33.99/23.27)	CSGQAEEFTHQGHK..SQVQ
  400-  419 (32.06/21.53)	CCQQDDSNSHWSVKlgSQPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.14|      29|     389|      31|      60|       4
---------------------------------------------------------------------------
   31-   60 (48.39/33.28)	VLNGDPK.......GKNFLYcNGNSVVIRDLENPKIS
  423-  458 (44.75/25.34)	VREGDPKliavaclNEVLLY.NGSSLSARQTINYETS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05913 with Med16 domain of Kingdom Metazoa
Unable to open file!