<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05848

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSVSASNYATNITSSQPPSQATSQPANLSSPPSSAPMSTQTSQQPTLGPTNSFPTPASSVSGHFMGPTSVEDSEHAGTSFEHVQADSGATTATGLHASSTQRSEHRRTDHDRELEGPTPGIDVRNFAGMDVPLTRDDADAMDVDKDVNASAKSDGLSLESLQQDFSSTFHLCKSSHIATGPDPALDLISLYGLGPVAKSVARMDPVTGEKINRLRKSYEGKLKGLGLAGRNKPVKHDPSTPGGLRHLTMWPEEEWQNQKVYGKEIKVADVDSALHNLQMKAMQMEPGTVPNNEYWEDVLGHEKPSKHAGHGDGKKAATLHNTARSPSQANETPLPTEPERARPRRGRKRHYDDNSFVGYGEGYADDDDDAAFYSNSEGMGKKKRKKEHVPKVSTPLPDRGGSYGVGMFGIGAR
Length413
PositionHead
OrganismAspergillus lentulus
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus.
Aromaticity0.05
Grand average of hydropathy-0.855
Instability index45.09
Isoelectric point6.19
Molecular weight44437.42
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364151

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05848
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     168.09|      56|      60|      38|      95|       1
---------------------------------------------------------------------------
    6-   72 (89.20/44.20)	SNYA.TNITSSQPPSQATsqpanlssppSSAPM...STQTSQQPTLGPTNSF..PTPASSVSgHFMG...PTSVED
   73-  137 (78.88/38.76)	SEHAgTSFEHVQADSGAT..........TATGLhasSTQRSEHRRTDHDRELegPTPGIDVR.NFAGmdvPLTRDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.56|      34|      44|     219|     252|       2
---------------------------------------------------------------------------
  219-  252 (62.47/34.40)	EGKLKGLGLAGRNKPVKHDPSTPGGLRHLTMWPE
  264-  297 (59.09/32.18)	EIKVADVDSALHNLQMKAMQMEPGTVPNNEYWED
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05848 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DDDAAFYSNSEGMGKKKRKKEHVPKVSTPLPDRGGSYGVGMFG
2) MSVSASNYATNITSSQPPSQATSQPANLSSPPSSAPMSTQTSQQPTLGPTNSFPTPASSVSGHFMGPTSVEDSEHAGTSFEHVQADSGATTATGLHASSTQRSEHRRTDHDRELEGPTPGIDVRNFAGMDVPLTRDDADAMDVDKDVNASAKSDGLSLE
3) SALHNLQMKAMQMEPGTVPNNEYWEDVLGHEKPSKHAGHGDGKKAATLHNTARSPSQANETPLPTEPERARPRRGRKRHYDDNSFVGYG
367
1
272
409
159
360










Molecular Recognition Features






MoRF SequenceStartStop




1) DDAAFYSN
2) KKKRKKEHVPKVSTPL
3) VGYGEGY
4) YGVGMFGIGAR
368
381
357
403
375
396
363
413