<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05843
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MDSAQQFDHATIIDLPGSSQGAAHGTFDIFEWYPHYQSCQRYFLDHAQHSVTVQALCAFLNIRLPFQRIPHPVSSSSSKASTPSAGLPSSVSESSPHPAPSVSLIPYIRRLVATGMDSPGVLQGFFGDDWTAGVGYLHEQERRNYLFAAKSGGWAAVKRDYDMPPLETIPFLRPLQGTVDSEIEAAERSWKGKDGSKCYTLMTDIRVIQDAMLSVSTGSTPKTNAEAIAIFFSIIDWIHAVVSWHNSHFDPGQHSSGMMSSPDVVSLFESLGILLAALSGTGKGLEVLSAESHEGLKVKLGQALSAYLPLCVEVSLPLRNRLDGLQKEFNLYGERAPKSLDVPMMENMNVNALQFEASVMDGPVINSRAGLYVFINAMLVGRPLVDDGMLINYLANRYGGHYEALIEEILTAAFDVLSNGMYRNESSRTMFVFRSFLVNKLPAFFAAMLASTMVSIPMEMCISHALSRLDPNTFPSFSQMFEMQGNTVLSDVRQEFLFACASHKLIPESSIERLLGENPMQTLPVGYNKDELVSQINANPERAEQLINEIESMEGNAGAIIGAITEVMHNLCSQKESMTLKNICNSLSRRPQALDVVLIFRNPKQVLQPLCALLDSWHWDEDQGENQPVYDEFGSILLLVLAFKYRFDLRPADLGISSNDSFVLRLLERGSCSQKLDALDEKQNKNLGSWIAALFIAEGISEETMSACSPQEFYLLVATLFSQSLEACETGKLEFDTLKGGFEYLLEPFLLPSLIFALTWLGNHIWETELDPSIPLKALHSLVNPSSISGEAREIHRTVLNITARTLEEQLKDVRTRHPSRTDIKPILDSLEPCLSFQRVGSSHRSELESWTTHSGGGLLGSIRSTFQSLVLWSTNPEVSMAPPPYTHRQLIAGVRMLGASRVFPALIEELKLQTEAGNGPLALDLAATLICAPMAETFSVEQNSHQPVDPNKEALPRCGILTLRDVLALQHENVPKISEKDPLRAEVIVRLYRRVNALLAPPSQVPNLDVNNIIQNMQLGGVGVGVGAGQMELDAAGAADDGVGPDDAENIHRMIDNAAAAAGLDSSGTGLDTSIDDVLNAADMAVGNPEFLDLDMEGMF |
Length | 1101 |
Position | Tail |
Organism | Aspergillus lentulus |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.059 |
Instability index | 49.29 |
Isoelectric point | 4.93 |
Molecular weight | 120712.04 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 ARBA:ARBA00003669
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP05843
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 208.45| 60| 101| 10| 72| 1
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10- 72 (100.35/79.59) ATIIDLPGSSQGAAHGTFDIFEWYPHYQScQRYFLdHAQHSVTVQALCAFLNIRlPFQRIP..HP
113- 174 (108.10/70.74) ATGMDSPGVLQGFFGDDWTAGVGYLHEQE.RRNYL.FAAKSGGWAAVKRDYDMP.PLETIPflRP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 53.27| 14| 25| 359| 372| 3
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359- 372 (26.59/17.80) VMDGPVINSRAGLY
385- 398 (26.68/17.88) VDDGMLINYLANRY
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 64.23| 22| 26| 256| 279| 4
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256- 277 (37.03/19.08) SGMMSSPDVVSL..FESLGILLA.A
279- 303 (27.19/17.54) SGTGKGLEVLSAesHEGLKVKLGqA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 52.21| 16| 21| 733| 748| 5
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733- 748 (29.44/20.78) LEFD.TLKGG..FEYLLEP
754- 772 (22.78/14.18) LIFAlTWLGNhiWETELDP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 78.28| 25| 26| 946| 970| 7
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946- 970 (44.58/28.58) HQPVDPNKEALP.RCGILT..LRDVLAL
972- 999 (33.70/19.92) HENVPKISEKDPlRAEVIVrlYRRVNAL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 71.26| 23| 26| 528| 553| 8
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528- 553 (31.85/28.03) NKDELVSQINanpERAEQLINEIESM
556- 578 (39.41/25.02) NAGAIIGAIT...EVMHNLCSQKESM
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 100.41| 24| 26| 440| 463| 9
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410- 435 (26.01/12.32) .L.TAAF.DVLSNGMYrnesSRTMFVFRS
440- 463 (41.65/23.98) KL.PAFFAAMLASTMV....SIPMEMCIS
468- 490 (32.75/17.34) RLdPNTFPSF..SQMF....EMQGNTVLS
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