<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05802

Description Uncharacterized protein
SequenceMLACSGASIDRCWGLKVYLVEMQGKGKNCLPIEALCEFKVFEILNDGQEIVERYVAFRPLTAAENFQRIVNGIDFSDENFGKQTSIGTSDRNAGFRIPDKTWKLLRDQIRSAYTEVCAFIELMAVLKETKCLSLCQVAPSDQDNDMDATGCNVGLHTITCLSGKKMALAAASSILLKGAERFRSRHVEIAQAEQRFADGKKSILYHEGLMQLRKSWRLKLGRNVILGDASLRCIGSRAKEGGNFEVFESDYSKFDSNGLFDVTKVRLSSFSCFYDAQVKFSSTMESLLNKDLCTGRLRVVIRHLNSKHPNNWYHFLKPCIRANAVSYTYSPPMSQSDRLCLAQNLLMCREILSTLSYEASMIGMDETKNDLVAFSSLGKVVATVLPGVQLSVRLERRVDDECNEEEEENHPGLSTQLKRILFYQHIHSWSNIASVPNPPTGPVQVPRRLRAAGATITLRNALNRNGDGGMPIITACVAGFGGPAASAWISSQIQTFRSVSGSLPGNPHQAFAIPVGQERYAYFNDWGSGHVQQQQQQHQVVPASMDEVTSSGLTLSGLEHALRLSQASPAAIACILGSGDGLLMQIVRLARHRVLRQRVARCLTQFARGGGDGTVTASVGMCVTTLWHSIASPLSSGVSVTFNSVGYSSFRTRMTVCVGVESISVYGVCEAAQSLTIPATADLQNELLRILKRQELRNQMLTIQGIASKFLGWIQLGCSSAPSVDNPSSALLLACRSGSRIVCIRGGSSYPEGLEFLAAKATQSNLTNLVSDGDMLRSTLTTSSDGRNDSFGCGQFAFRKVDLARLPGRHVVGKIESLLTCLNCP
Length825
PositionHead
OrganismHydatigena taeniaeformis (Feline tapeworm) (Taenia taeniaeformis)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Cestoda> Eucestoda> Cyclophyllidea> Taeniidae> Hydatigera.
Aromaticity0.07
Grand average of hydropathy-0.091
Instability index43.21
Isoelectric point8.72
Molecular weight90154.21
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05802
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.88|      41|     564|     121|     163|       1
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  121-  163 (68.43/54.06)	ELMAVLK..ETKCLSL................CQVAPSdQDNDMDA..TGCNVGlHTITCLSG
  686-  746 (54.44/33.91)	ELLRILKrqELRNQMLtiqgiaskflgwiqlgCSSAPS.VDNPSSAllLACRSG.SRIVCIRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     140.25|      36|     564|     198|     234|       2
---------------------------------------------------------------------------
  198-  234 (59.53/29.68)	DGKKSiLYHEGLMQLRKSWRLKL.GRNVILG..DASLRCI
  583-  603 (27.67/ 9.23)	...........LMQI.....VRL.ARHRVLR..QRVARCL
  785-  822 (53.05/23.00)	DGRND.SFGCGQFAFRKVDLARLpGRHVV.GkiESLLTCL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.66|      36|     143|     466|     502|       3
---------------------------------------------------------------------------
  466-  502 (61.56/39.34)	GDGGMPI.ITACVAGFGGPAASAwISSQIQ.TFRSVSGS
  611-  648 (58.10/31.69)	GDGTVTAsVGMCVTTLWHSIASP.LSSGVSvTFNSVGYS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.21|      17|      25|     539|     555|       8
---------------------------------------------------------------------------
  539-  555 (28.49/16.02)	QVVPASMDEVTSSGLTL
  566-  582 (29.72/17.00)	QASPAAIACILGSGDGL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05802 with Med17 domain of Kingdom Metazoa
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