<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05795

Description Uncharacterized protein
SequenceMYMTDQYPRLDGRSLEDSHTNIFALTDLSGIHYRVYSLREDRNYSIYDDPLLSAYNNCLRENLMCAWVRRKRVDTEPHKPDVFSNFSKELWVFWAQYSINFSFFLHGESTVCASLDIRRFPKFKSLTPRVLSLCEKSAGRFNVVLAPYGITAQLVVPPQAYTNDIFVDKELEFWKRFFPIRSPGDSCTLLNSSAHPNSFYLDFLTPNKSSPAQQQQQQQQQQCSRSDASSKRSSANYTEQLPDFVNVLIGGFRMRYPTCFVLLAEDQLTSLMEHLQDGPDKRLSLPPKSRQTASDSHRFPHPRLPLKQLPSTKRRIYLATRALQRALRFERSFVPELDCLHIRSRLLPQTTVDDAVFRSNTEVKSPQVVLPLHRRSGSISRMLCAFVSEIDASLGVGGGNNCDMPVSALRRQPSSTDPLMPKLSPQPSNSVIFGVGGVSTAASNSHSASVSVAVATSNLQATHHMGAAKPPCLFNSQNINPKESGSSYSKSKPMDWDEAPVSTMTPKLPRCVVRISQATTQQVKSLPPLTVKPEAMGGETSWLARQVANRCRRSPIVHLSYVDQVNFLDHSSTSFGDESM
Length580
PositionMiddle
OrganismHydatigena taeniaeformis (Feline tapeworm) (Taenia taeniaeformis)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Cestoda> Eucestoda> Cyclophyllidea> Taeniidae> Hydatigera.
Aromaticity0.09
Grand average of hydropathy-0.416
Instability index59.39
Isoelectric point9.18
Molecular weight65183.25
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05795
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.74|      22|      83|      73|      97|       1
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   73-   97 (32.77/30.77)	VDTEPHKPDVFSNfsKELwVFWAQY
  156-  177 (41.96/24.94)	VPPQAYTNDIFVD..KEL.EFWKRF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.30|      13|      25|     239|     251|       3
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  239-  251 (22.58/15.21)	EQLPDFVNVLIGG
  266-  278 (22.72/15.34)	DQLTSLMEHLQDG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.42|      17|      21|      22|      41|       4
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   17-   40 (19.06/18.47)	DshtnIFALTDLSGIHyrvYSLRE
   41-   61 (26.36/15.25)	DrnysIYDDPLLSAYN...NCLRE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     127.90|      30|      36|     369|     398|       5
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  340-  361 (30.13/13.30)	...LHIR....SRLLPQTTVD.DAV..FRSNT
  369-  398 (51.36/27.42)	VLPLHRRSGSISRMLCAFVSEIDAS..LGVGG
  406-  437 (46.41/24.13)	VSALRRQPSSTDPLMPKLSPQPSNSviFGVGG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05795 with Med13 domain of Kingdom Metazoa
Unable to open file!