<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05789

Description Uncharacterized protein
SequenceMLKKAGKDGQEKVPLVPLLRQTSPAEKTTTPVCLRQSQKASNSSTSISKIPGAPVDFTATTTATTAAVASPGSSSTSTSTNTASAVTSSLAFSSGSLLTLTRSESCLNPSQSRGSSSSASVTSPTVPKNSSLVDTHQTPPPPPPPPPPPPPSQTISTMQQFPQTSSTASATSIICSTPTRRRHRTTFSQEQLDELESAFRRSHYPDIYCREDLAKTTKLQEARIQVWFQNRRAKHRKQEKQQRAQQQQQQQAHALALQQQQQQQHHTHQHHHQQQQQQQQQAVQHSFSTPGYHQLGAVLETQVGMYRSAATAYTAQTPSAIYPFTYTQTANFVEPLPAASLFGNLDRKIESVEEGNGKRDSSSAATGEQQTSSPKEAMIIKKESILLESGPVGHLDTGEEEGGDVGGGSEEEEDDDEDDEEDEEGEPTSPKVARLENWSPTDDKTDSGMGEVKPVTAPLPPQSEVPAYMPSSQCFSSSNLTEIPTAQMISYQIYGQFPPQYHPHMAPPPPPPSHGPGHHSIYTSLASDTTEIANDVSNTAVIQFPPPLSIENSITSVKGQTISAMASQWQNVTTADPAEWFLHTNGTAMPIQTAAAVAYGTPMGNAFLHPHI
Length612
PositionTail
OrganismHydatigena taeniaeformis (Feline tapeworm) (Taenia taeniaeformis)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Cestoda> Eucestoda> Cyclophyllidea> Taeniidae> Hydatigera.
Aromaticity0.05
Grand average of hydropathy-0.733
Instability index66.34
Isoelectric point5.64
Molecular weight66097.93
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
DNA binding	GO:0003677	IEA:UniProtKB-KW
DNA-binding transcription factor activity, RNA polymerase II-specific	GO:0000981	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05789
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.74|      16|      16|     251|     266|       1
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  232-  248 (22.11/ 8.92)	RAkHRKQEKQQRAQ..QQQ
  251-  266 (29.96/14.35)	QA.HALALQQQQQQ..QHH
  269-  285 (21.68/ 8.62)	QH.HHQQQQQQQQQavQH.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     379.39|     108|     364|      70|     178|       2
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   70-  178 (183.11/73.18)	SPGSSSTSTSTNTASAVTSSLAFSSgSLLTLTRSESCLNPSQSRGSSSSASVTSPTVPKNSSLVDTHQTPPPPPPPPPPPPPSQTISTMQQFPQTSSTASATSIICSTP
  439-  546 (196.28/75.97)	SPTDDKTDSGMGEVKPVTAPLPPQS.EVPAYMPSSQCFSSSNLTEIPTAQMISYQIYGQFPPQYHPHMAPPPPPPSHGPGHHSIYTSLASDTTEIANDVSNTAVIQFPP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.98|      43|      53|     328|     377|       3
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  328-  377 (63.27/46.07)	QTANFVEPLPaaslFGNLDrkiESVEE....GNGKR.....DSSSAATGEQQTSSPKEA
  382-  433 (59.70/30.13)	KESILLESGP....VGHLD...TGEEEggdvGGGSEeeeddDEDDEEDEEGEPTSPKVA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.43|      19|      34|      12|      32|       4
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   12-   32 (29.13/19.74)	KVPLVPL.LRQTSPAekTTTPV
   49-   68 (28.30/13.38)	KIPGAPVdFTATTTA..TTAAV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.21|      12|      29|     555|     566|       5
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  555-  566 (20.10/11.92)	TSVKGQTISAMA
  587-  598 (20.11/11.93)	TAMPIQTAAAVA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.43|      13|      18|     180|     192|       6
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  180-  192 (23.80/12.12)	RRRH.RTTFSQEQL
  200-  213 (19.63/ 8.91)	RRSHyPDIYCREDL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05789 with Med29 domain of Kingdom Metazoa
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