<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05781

Description Uncharacterized protein
SequenceHHSEYIVAQRQAIENCIETISRIRALSSPDPCQQHVRFATLRNQLYRIALQCDLQLGDTGPILPPGLSSSGGIAWRISADCFSVVISAIPADGYSLPPGTTPPEDYPVSVAAVHFEFNQDKPIECNVLVEDLKKRNYNSLLKHVKNLIALYDLPGEIAQRCRAYLCLQALEQDLLMLTTAVSNRISNAATPLSLEPPNPPWKTANPPSDVNCLAQSINGSAVGQVVQRTGGAFTVLTYFVSAAQKAIAMSHASKHSNRAEPEAGMLGGFCASVGLRATANANQHSLPLVSLVNVIKDADGYNVAQFTNADGITRVNIAAEFFLKLHPPLLFDVESISEIEAITISIHMGDLGVSEARVVGAVLPEGFLFDPEQNKVKESSNEDKYDPTGILARSHSLPVALTWLLLQLGCPVVKMLTFTFPDKSVTSNGACKTIKPVGKQRSAIYLARARNALHLSDDASADGLLAGADKLSEKSLQDAERLFLSDGVEGGAGILYDPTAGTTPSWPILQTSQSLPPLPSQQFPSRPLLPPGVMATTPPAGLTSDQLSVPTPKGLDDTFPSPALSSNNQSFRSIPVIPGVMTTSATSLFGQPMKPPISYSAASTPSSIGFKPQTPASCGGSMLVSLLDEDNPPQSLPPPPHVGPSALPPNRILSSPVTAATPLPSSPITAQVPNSNHSTPLTLIPAFPKSSGSSDVLSHLLTSTGNIGVGGSNSIPVGANSSANSSTQSLPSALKSTTNSETGVSKKGRKRRVDPPMGGFISTLPTRAAIMDAMKQPTKPTPSKPAMLAKESVYDFEDCPPSTNIAPPPPAPFPPPKPFAFSDVSAPERTAERKSGLKFVIKTNRSGSGGGLTAASAATATTPTENAAVVTKPRTKAVEGKPFALFKQMQQQQQPSASSQHPKKERKRRVSSKSKEVQPSLVLSISSPKMFPSAPIVTSTPSPKKHGLVKGKPGRKKTLSTSSEPKRNRLISLDEPPVEPGAIVPSSGVSGVGSSSGGNSTNRLIKGYKIPKVRKLPSPPSNNSPPVASQAINQEDAATARAEVTPTVTAMSTPLPPPPPPAPAAPSTIPTTTTKSQQRSLLFIVENLKRAVVESSAAPHLHQQQTTSTTVVELARGSTEGSGDAANIAEDTLPADSNDNLFEKFSSAPTPTKGGTLSVAPLPAKRLRVTPTLGAGVYDLNDVNLNCRPPEAVVVAVANVSATAAGASEVEAEREESGDVGVTLFGQDGQSDSQTPPANLDEETTAAGGLIKAPTDTPDSPTESMSAKTFIASSKIIPVSQEPPPSGHTPSLPTGTVANSAVVAASSSSPFFNKPLSSGRPTSGTLRGGMARGAAGPRFTYLRGGWSSRPYGSPMMPRGTGGGGGAGRLPLPPWGGGPGGPPQPPPGPGGGVGGSGGWGLPRGGAPLYRIGGGGSGVGVGRGGGVSAGSSGGGPFCGGGNRQAPPKT
Length1447
PositionMiddle
OrganismTaenia asiatica (Asian tapeworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Cestoda> Eucestoda> Cyclophyllidea> Taeniidae> Taenia.
Aromaticity0.05
Grand average of hydropathy-0.265
Instability index54.74
Isoelectric point9.13
Molecular weight149722.58
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05781
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|    1111.35|     168|     168|     515|     682|       1
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  407-  514 (122.29/27.84)	..........................................QL..G....CPV.VK..MLTFTFPDKSV...TSNG.ACKTIKPVGK..QRSAIYLARARNA........LHLSD...DASADGLLAGA.....DKLSEKSLQDAERL..FLSD.GVEGGA..G.................ILY.DPTA...GT..TP..........SWPILQTSQ....S
  515-  682 (292.48/76.02)	LPPLPSQQFP...........SRPLLPPGVMATTPPAGLTSDQL..S....VPT.PK..GLDDTFPSPAL...SSNNQSFRSIPVIPGVMTTSATSLFGQPMK........PPISY...SAASTPSSIGF.....KPQTPASCGGSMLV..SLLD.EDNPPQ..S.LPPPPHVGPSALPPNRILS.SPVT...AA..TPLPSSPIT..AQVPNSNHSTP..LT
  683-  853 (166.49/40.36)	L..IPA..FP.......kssgSSDVL.SHLLTSTGNIGV....................GGSNSIPVGAN...SSANSSTQSLPSALKSTTNSETGVSKKGRK....rrvdPPMGG...FISTLPTRAAImdamkQPTKPTPSKPAMLAkeSVYDfEDCPPS..TnIAPPP...PAPFPPPKPFAfSDVS...APerTAERKSGLKfvIKTNRSGSGGG..LT
  893- 1050 (140.38/32.97)	QQPSASSQHPkkerkrrvsskSKEVQPSLVLSISSPKMFPSAPIvtS....TPS.PKkhGLVKGKP.....................GRKKTLSTS..SEPKRnrlisldePPVE....PGAIVPSS.GV......SGVGSSSGGNSTN..RLIK.GYKIPKvrK.LPSPP...SNNSPP..VAS.QAINqedAA..T......AR..AEV......TPtvTA
 1055- 1158 (127.93/29.44)	LPPPP....P...........PAPAAPSTIPTTTTK....SQQR..SllfiVENlKR..AVVESSAAPHL.....HQQQTTSTTVVE..LARGSTE..G...............SG...DAANIA..........EDTLPADSNDNLF..........EKFS..S.AP.............................TP...............TKGGT..LS
 1159- 1273 (141.55/33.30)	VAPLPAKRLR...........VTPTLGAGVY......DLNDVNL..N....CRP.PE..A........................VVVAVANVSAT.........................AAGA.SEVEA.....EREESGDVG....V..TLFG.QDGQSD..S.QTPPANLDEETTAAGGLIK.AP.........TDTPDSP.T..ESMSAKTFIAS....
 1278- 1388 (120.22/27.26)	.........P...................VSQEPPPSGHTP.....S....LPT.....G...TVANSAVvaaSSSSPFFNK.PLSSG.RPTSGT.LRGGMAR....gaagPRFTYlrgGWSSRPYGSPM.....MPRGTGGGGGAGRL..PLPP.WGGGPG..G..PPQPPPGP................................................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.90|      11|      24|    1389|    1412|       2
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 1389- 1404 (19.80/12.27)	GGgvggsGGWGLPRGG
 1413- 1423 (22.09/13.20)	GG.....SGVGVGRGG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     277.03|      91|     108|       2|     105|       3
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    2-  105 (128.55/109.48)	HSEYivAQRQAIEnC...IETISRiRALSSpdpCQQHVR.FATLRNQLYRIALQCDLQLGdTGPILPPGLSSSGGIAWRISADcfSVVISAIPADGyslPPGT.TPPED
  114-  209 (148.48/84.10)	HFEF..NQDKPIE.CnvlVEDLKK.RNYNS...LLKHVKnLIALYDLPGEIAQRCRAYLC.LQALEQDLLMLTTAVSNRISNA..ATPLSLEPPNP...PWKTaNPPSD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.60|      10|      35|     325|     334|       4
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  325-  334 (19.59/ 9.63)	LHPPLLFDVE
  363-  372 (20.01/10.00)	LPEGFLFDPE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.83|      10|     108|     281|     291|       5
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  281-  291 (14.99/13.03)	ANQHSLPlVSL
  392-  401 (18.84/10.88)	ARSHSLP.VAL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05781 with Med1 domain of Kingdom Metazoa
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