<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05774

Description Uncharacterized protein
SequenceMQGRGKNCLPIEALCEFKVFEILNDGQEIVERPLTAAENFQRIVNGIDFSDENFGKHGSSEASGRNASFGIPDKTWKLLRDQVRNACTEVCAFIELMAVLKETKCLSLCQVAPSDQDGDIDVSGCNVGMHTITCLGGKKMALAAAGDILLKGAERFRSRYFEIAQAEQRFTDGKKSIFYHEGLMQLRKSWRLKLGRNVILGDASLRCIGSRAKEGGNFEVFESDFPKSDSNGSFDITKVKFSSTMESMLTKDLCTGRLRVVIRHLNPKQPNDWYQFLKPRVQTSAAPHTYSPPMSQSDRLCQAQNLLMCREILSTLSYEASIIGMDGTKNDLVAFSSLGKVVATVFPGVQLSISLERMVDEDCDEDEGERHPGLGTQLKRILFHQHIHSWSNIASVPNPPTGPVQVPRRLRAAGATITLRNAANRHGDGGMPIITASVAGFGGPAASAWMASQSQAFRSVSGPLSGNPHQAFAVPVGQERYAYFNDWGSGHVQQQHQQHQIVPASMDEITSSGLTLSGLEHALRLNQASPAAIACILGSGDGLLMQVVRLARHRVLRQRVARCLTQFARSGGDEAMTASVGMCVTTQWHSIASPFSSGVSVTFSSMGYSSFRTRLTVCVGVEEVSVYGVCGAAQSLTVPATADLHVELLRILKSQELRNQMLTIQGIASKFLGWIQLGCSSTPSVNNPLSALLLASCSGSRIVCIRGDTSYPEGLDFLVAKTTQSSLTNLASDGDLLRSTLTTSIAGRGDAFGRGQFIFRKVDLARIPGRHVVGKIESLLTCLNCP
Length786
PositionHead
OrganismTaenia asiatica (Asian tapeworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Cestoda> Eucestoda> Cyclophyllidea> Taeniidae> Taenia.
Aromaticity0.06
Grand average of hydropathy-0.116
Instability index40.28
Isoelectric point8.53
Molecular weight85270.43
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05774
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     263.32|      83|     212|     461|     564|       1
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  359-  411 (62.15/25.62)	.............................................VDEDCDE..DEGERHPGLGT...............................................QLkriLFHQhiHSWSNIASVPNP...PTG.PVQVPR..RLR
  461-  554 (133.73/113.38)	SGPLSGNPHQAF....AVPVGQERYAYFNDWGSGhvqqqhqQHQIVPASMDEitSSGLTLSGLEH...............................................AL...RLNQ..ASPAAIACILGS...GDGLLMQVVRlaRHR
  600-  715 (67.44/32.84)	SVTFSSMGYSSFrtrlTVCVGVEEVSVYGVCGAA.......QSLTVPATAD..............lhvellrilksqelrnqmltiqgiaskflgwiqlgcsstpsvnnplsAL...LLAS..CSGSRIVCIRGDtsyPEGL...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.89|      11|     216|     205|     216|       2
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  206-  216 (21.29/13.54)	RCIGSRAKEGG
  562-  572 (21.60/ 8.34)	RCLTQFARSGG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.43|      30|     553|      94|     125|       3
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   94-  125 (44.62/36.67)	IELMAVLK....ETKCLSLCQVApSDQDGDIDVsGC
  646-  679 (47.81/29.20)	VELLRILKsqelRNQMLTIQGIA.SKFLGWIQL.GC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.22|      28|     304|     415|     442|       4
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  415-  442 (49.80/38.51)	ATITLRNAANRHGDGGM..PIITASVAGFG
  720-  749 (41.42/30.56)	AKTTQSSLTNLASDGDLlrSTLTTSIAGRG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05774 with Med17 domain of Kingdom Metazoa
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