<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05760

Description Mediator of RNA polymerase II transcription subunit 13
SequenceLTPLSQPKRVAFAVVLPSWQGQQGIGVAASESQRRSVAALSTFFYELSLAFENCMFGRHYPYFQPKAGNPESAFIHVQCAFPHKDENDFSQTNASRHFLKSSGSGSGGGVHFPDTLLHCLHHYKTGVIQAVRKALSERGVAMPDGHCSPILAPFAGQQEKSSPGPLVIASKSGPLNGQGPLTTAFDFYRGTELDVHLVIYLVEPFTQHFDMDDELRNLTTRCMAEAASRMVAQLPASWRQRVSVQLLPMAHITSPRCGLVSGHDGEGTADFLPHVKSMALAVYTSVDRVISPSLINANRTLTGMGPAAEKEVISANFESVHIRRVYSPAYTLAQSHDLWGQWDMHPAEPLQPSSVLFVSYCLSEDQQWLLATCTDQYGTLSQQTFINIRTPESMCTPSGVTVNKSNTATDTSHISARRLALARLWDFIISLLATTSNPWRLVIGRLGRLGHGELRGWCGLLSRKNLQNVNRSLRANCALCNLVTLVPSTSNNNGPSYRGRSTATISLTADSRVPSSCVHETPSLISACLVSTEPHSTFRLFPGSDLNTGDFGGPGGHGSSSHGGGGGGSGGVGGGSGASVSSGSGGVGSGPAGQVPAGPFANGVISAAGYAPSTTHILVFPTSTSAQAQSEQDDINFTEIFGDFYEENEFDDHAAVGMPSLDTLTTPNSAGPGCNLASAVVGGVGGVGPCSGVPQDPNGGGTGLLISSLMRGDVPVEPNTQGMPYEAACRERAKFLLESLLPFGVPDPQSEKPSLMQQPLALGYHVSTAPAGPLPSWFWAACQQTRRNSPVCLKSSLHLHCTLVGVDDDAAAHGGQQCSSNSANAGSHLLDSNVTCDVLRFVLECYNALSWLSYDPCINDRRSCLPVHMLSLAQLYQAAKAFT
Length883
PositionMiddle
OrganismMesocestoides corti
KingdomMetazoa
Lineage
Aromaticity0.07
Grand average of hydropathy-0.134
Instability index54.47
Isoelectric point6.22
Molecular weight93740.33
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05760
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.07|      19|      19|     552|     570|       1
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  552-  570 (41.69/17.47)	GGPGGHGSSSHGGGGGGSG
  573-  590 (34.31/13.05)	GG.GSGASVSSGSGGVGSG
  671-  688 (27.07/ 8.73)	.GPGCNLASAVVGGVGGVG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.83|       9|      28|     109|     119|       3
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  109-  119 (16.84/15.24)	GVHFPDTllHC
  139-  147 (20.99/11.82)	GVAMPDG..HC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.99|      11|      24|     486|     496|       4
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  486-  496 (21.07/10.13)	VPSTSNNNGPS
  513-  523 (21.92/10.82)	VPSSCVHETPS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     224.04|      55|     418|     303|     361|       5
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  235-  273 (50.72/21.02)	...P..ASWRQRVSVQL..LPMAHITSPRC...GLVSGHDGEG.TADFLP...............
  303-  361 (88.87/55.38)	GMgP..AAEKEVISANFESVHIRRVYSPAY...TLAQSHDLWG.QWDMHPAEPLqPSsvLFVSYC
  722-  782 (84.46/41.08)	GM.PyeAACRERAKFLLESLLPFGVPDPQSekpSLMQQPLALGyHVSTAPAGPL.PS..WFWAAC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.83|      16|     455|     181|     196|       6
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  181-  196 (29.97/25.14)	LTTAF.DFYRGTELDVH
  637-  653 (27.86/22.81)	FTEIFgDFYEENEFDDH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05760 with Med13 domain of Kingdom Metazoa
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