<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05752

Description Uncharacterized protein
SequenceMDSEPHKPEIYSNFVKELWVFWYGNEDCLKKDHLISPDLEITSSGTWKQGLSYNTRCILFKALHNLIERYLLAKGYVRLFKSFLQPCNSQSIRDKCQYSISFSFFLHGESTVCASLDIRRFHKFKSLTPKILSFCEKFSGRINVVLAPHGISARLVASSQTSDTSSERELEMWKRFFPIRLVGDNFNSSGSHQNSFYMDFLTPNKSSPIQQPQQGSKPDSSSKRPIPEPLPQFVNVLVGGFRMRYPTCFVLIAEDQLSSMTVQHTRDLADRRPNAFPKNKHSVLDSYGFPYPKFPLKRLPSSKRRCYISARFLQRALRSERSFMPDFDSLYAKFRLLSQVTGDDSVFTSESKSTIALYSTDDLPITGFEKDEDALIQMAIKNLGESVEVIRQYAELVPGFSSLTEADREKIILLHSADLITFRMAFRTAKAAAERAQLNLFHPNSTQSSPYFRPPIPTDTPRIPQQSNISAPQQTGPPFPGGIVEWHSQTNPSDPAFRPFHHNPLIGPSQLPSHPTPWQTGGVPRPLDFEVEDEGDANLAAWEVALSTPTEPGYIFENGSVMTDEELNRAGLGPWIRALTWFGWQLLELAMGDHSTVAGLSALVLINYQALCGRTDLENSSEIYTVHHRFVEMLKSHCCSPTNAVTIPTEYSGCYGPDRDPTGAVATATNAGNMLPPGRADSTYFSQVFKKKDTAHWIASHLLLQPLQRLHASGRLPSGPESSWLNTLVNLLNTGCNQSQTPPPCN
Length746
PositionMiddle
OrganismHymenolepis nana (Dwarf tapeworm) (Rodentolepis nana)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Cestoda> Eucestoda> Cyclophyllidea> Hymenolepididae> Rodentolepis.
Aromaticity0.10
Grand average of hydropathy-0.386
Instability index44.59
Isoelectric point7.31
Molecular weight83758.88
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05752
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.41|      14|      43|     441|     454|       1
---------------------------------------------------------------------------
  441-  454 (28.22/15.40)	FHPNSTQSSPYFRP
  486-  499 (26.57/13.97)	WHSQTNPSDPAFRP
  514-  526 (21.62/ 9.68)	.HPTPWQTGGVPRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.11|      17|     257|     202|     218|       5
---------------------------------------------------------------------------
  202-  218 (33.39/21.04)	TPN..KSSPIQQPQQGSKP
  460-  478 (28.72/16.98)	TPRipQQSNISAPQQTGPP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05752 with Med13 domain of Kingdom Metazoa
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