<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05748

Description Uncharacterized protein
SequenceMWAHLSLNSQNRCVLRLGLHPGPFGLKEKRDVESLPINQQQRERDLFENPHCLIREHLEFLVERQKSIILLCKCLLMLSFHLLQFLSSTSDFMVTMEALRKPTIINNISRSPIVVQSARPVRSMSLMALSCCDLNLVYRGTLCLRLTYKIPEHGDQGLVFFSDGCHNLDLGANSSPQKGGGISSEIYPVQGFVPLPAFKQFLDSMKKAFNVEEGSMPFNAFTVSQLDRIVTNSKADPEDPLAVTISPLEKYFSSSLIFHASNQVMNSLRWQISAPLDIDTGEFTAKSHPDKGIEVKVKMYIWDDPVEGNLPSWRLQLKVSSDLEKSYTSNESGEFSAKIEEFFSRRVCSVSPQASAITSFFRLMTLPFKTLYDLVSNVFAWDLDGGSSTTGTTNSSTSLRVGLVSFTSAAPEPSVVLSMPHTLIMQIILTRPNTALSSQQEIAPGTSMASQRNPRVEVLTLTYDTAKNVVAVLGPSKKPQKSRYSALEDMVNQRFRNTQACTLVQFISHLRQGGPIIQQQQQQQQQQHAPQPSQQMPPQPQTQQLQSQQMSQQMHQPMQQ
Length560
PositionTail
OrganismHymenolepis nana (Dwarf tapeworm) (Rodentolepis nana)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Cestoda> Eucestoda> Cyclophyllidea> Hymenolepididae> Rodentolepis.
Aromaticity0.07
Grand average of hydropathy-0.279
Instability index58.05
Isoelectric point8.26
Molecular weight62770.14
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05748
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.67|      16|      16|     521|     536|       1
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  521-  536 (33.67/15.21)	QQQQQQQHAPQPSQQM
  539-  554 (31.00/13.50)	QPQTQQLQSQQMSQQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.03|      51|     114|     167|     220|       2
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  167-  220 (83.82/59.75)	NLDLG...ANSSPQKGGGISSEIY....PVQGfvPLPAFKQFL...DSMKKAFNVEEgSMPFNA
  277-  337 (76.20/44.42)	DIDTGeftAKSHPDKGIEVKVKMYiwddPVEG..NLPSWRLQLkvsSDLEKSYTSNE.SGEFSA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.22|      10|      30|     239|     248|       4
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  239-  248 (18.22/10.93)	DPLAVTIS.PL
  266-  276 (15.00/ 7.71)	NSLRWQISaPL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05748 with Med14 domain of Kingdom Metazoa
Unable to open file!