<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05738

Description Uncharacterized protein
SequenceLAEYRKVIENGIAAVSRFRSKTPEFYRSHVRFATLRNQLFILAQHYDLQLSDTGPLLPPGASSTGGIAWRLTSDCFSVVISAIPADGYSLPPGTTPPEDYPVSVATVHFEFNQDKPTECRVLADELRTRIYYSLWKHVKNLIALYNLPGETAQRCRAYLCLQALEQDLIALTTAVSNHLPHPATPMSLELTGGSSMKVANTASDVECLAQCVNGSAVGQVVPRTGGCFSCLTYYISPGQKADVIGQIHSRPPTGLKEGSESGMLDGYCASVGLRATANGVQYSLPLVSLVNLTKDADGYK
Length300
PositionMiddle
OrganismHymenolepis nana (Dwarf tapeworm) (Rodentolepis nana)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Cestoda> Eucestoda> Cyclophyllidea> Hymenolepididae> Rodentolepis.
Aromaticity0.08
Grand average of hydropathy-0.075
Instability index39.82
Isoelectric point6.71
Molecular weight32445.56
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05738
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.59|      28|      31|     222|     251|       1
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  224-  251 (55.11/35.47)	TG...GCFSCLT..YYISPGQKADVIGQIHSRP
  253-  285 (41.48/19.47)	TGlkeGSESGMLdgYCASVGLRATANGVQYSLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.67|      18|      30|     127|     144|       2
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  127-  144 (33.15/20.47)	RTRIYYSLWKHVKNLIAL
  154-  171 (32.52/19.98)	RCRAYLCLQALEQDLIAL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05738 with Med1 domain of Kingdom Metazoa
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