<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05729

Description Uncharacterized protein
SequenceMLGGSINFSLLQNHPVVNSVAVQLKNHISQCIRELETSLTLERGFSAFMNPEPYSIIEQDADRLDSLWPTLCMLSSKIVPFWPSQSKTDLIGFVIDIFLEFVASCKNEGVLLRLMWSLDRGIESGIFSPQLIAEALLSRRELVPENQLFFRAVFTFLLKLVFYLDYKSNRMVFTKSIDKTYHGIPSLSGIPFRNPAIELVQILLCREINLLPALFTMYELRGEKSSRPSKLIETEVEHFMSEFDYPLRILYSYNELNRVPIAGITQAKHPSFRLESELTLSILRQPILYPPAFKSRQLELTCDLLGQLRCTQLASSLLACEERQTMGPNQTPMGQAVGDLIFVFMETIETKKNTRWAVRVFSHLANLVISFILDRVVRLNDIISNLNSKIAGRVWPISRHFVMWFTLVCMSGFVGSNKLTDFVSCLYLFDQLFPEAYEFDNDTVGRLEELKSGRLELWGSKKRQLINTKTLEALGTGDPNLRFLLFVPDHLITRCSDSSADDDQVDENGIEDHSSIYSSSNLEAMPPVKMTKLDEEELVKNDDDEEDLTHMVAACACVWEIILQMNSEESMGRAVKDCHLPRPLPPLLHPLRTQIATWLDNLRDACSGISTVTEGGDISADIEMRQVVHALSWSEFIITLNTYSPVENYPITRSVVASFWLPSNVPVPGIGGGLPLDNGPFTLPYGLTGAGRRKPLSNRFIQKMSIHLQLKFCNEMLQKLSENTKPLSMETKNAHLTSPATLETFGRFLSYQMAKKVIPLREIYRRLLVESKSLNIPLYHEKTESDNTDDCHPPVRDDFYCLTFWFDLLGHRWIEALPVEHRLRYRDELFLRVNLNSHELIYALDWIIVRFSRRILTPDCVLYNIQCVSFQQQEFLPLQPLHHHQQIYSHSREITSRVILFSTLQASCAYDLIEEEPLVRTKVDQLTTVRAETRAIFGEEGNQFKLPAVIARLMDLLPPSATQVLLPPLQSSPSSQPPPIFLSETTSMDSSNESSESLYFSLRERLLISAYDIYKSLLSDSENDFKWAELNIQNERSFCTILIAIVKGKGPIPLFLLNNLLQMSPALVHSQVKVLCEFLVTEVCKFDEFDRGNLPTPDHIFSPSVVGPFFR
Length1111
PositionTail
OrganismHymenolepis nana (Dwarf tapeworm) (Rodentolepis nana)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Cestoda> Eucestoda> Cyclophyllidea> Hymenolepididae> Rodentolepis.
Aromaticity0.09
Grand average of hydropathy-0.070
Instability index55.39
Isoelectric point5.53
Molecular weight126724.56
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05729
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     122.84|      33|      39|     214|     251|       1
---------------------------------------------------------------------------
  167-  204 (27.90/12.11)	...........KSNRMvfTKSIDKTYHGIPSLSGIPFRnpaielvqILL
  219-  251 (58.19/45.07)	ELR.....G.EKSSRP..SKLIETEVEHFMSEFDYPLR........ILY
  255-  289 (36.75/15.86)	ELNrvpiaGiTQAKHP..SFRLESELT..LSILRQP..........ILY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     124.90|      35|      39|     348|     386|       2
---------------------------------------------------------------------------
  348-  386 (53.16/40.97)	IetkkNTR.WAV.RVFSHLANLV.IS.FILDRVVRLNDIISNL
  390-  426 (43.56/24.95)	I....AGRvWPIsRHFVMWFTLVcMSgFVGSN..KLTDFVSCL
  428-  452 (28.18/12.41)	..............LFDQLFPEA.YE.FDNDTVGRLEELKS..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.69|      25|      39|     852|     878|       3
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  852-  878 (39.18/28.42)	SRRIlTPDCVLYN.IQ..CvSFQQQEFLPL
  891-  918 (34.51/17.17)	SREI.TSRVILFStLQasC.AYDLIEEEPL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05729 with Med23 domain of Kingdom Metazoa
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