<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05727

Description Uncharacterized protein
SequenceMSARSKNSLPIEALSEYKVLEIASDGQEVLERPWTATDRFERIVSSIDFNDENYGIKDAKAEEENKANKIPERSWNNIREWIRTSYTEVCAFLDFISVFKETKCMAILQVAPSDQDAEFGGRSLSAQALTCLGGKKMALSNAATILLRGAERFHARNVEKIQEQQRFADGQRPPSYHESLLELRKSWRIKLSQNSILGDVSLRCIGSRGKEGGIFEIVEADSTQPNSEGVYESIKVKFSSTMESLLNKEQFTGRLRVTIRHLDRNNTKDWFHSLMPQKSGSPLCRQFKRPKTQFDRLCLAQNLLMCREIMSSLFYESSLIGINKFNNDLIAFSSPNKVVTTIFPGVQLAISLEKAEDSPLESGEVEYPSLSTLLKKLILRQHVQSWCNIASIPYPATGPVQVPLHLRGGGASILLNSYKFPQGQNDGGIPIITNCVTGMGNSTASTWITWQNQALRAAPHQPYSAPRGQERYAYFNDWALSQQPLQQQAQLISDEVSVSGLMLSSLEHDLRSNHASPEAIACILGSGDGLLTPIVKIARHRVLRQRVAKILTKFVREIAEERMSITAIWHTVSTPLSSGVTVTMYSLGHATCSTRFLIAVGIEEVSVNGVCGTSPAINIPANADLQRELLQILKLQELRNKMYTIQSLAAKFLGWVQLGCPAMPSVDSPLSALLLASRSGNRLASVKATNLLVVPSPNILNCAPSNVKLENTGEVGSQKVVCIRASDKGEGLEFLVAKSQQGELTTVGSRGDLLQNLLSYRDSSSRFHFRKVDLSRVCGQNVVGKIEYLLTCLNFA
Length796
PositionHead
OrganismHymenolepis diminuta (Rat tapeworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Cestoda> Eucestoda> Cyclophyllidea> Hymenolepididae> Hymenolepis.
Aromaticity0.07
Grand average of hydropathy-0.202
Instability index49.86
Isoelectric point8.74
Molecular weight88084.76
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05727
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.66|      16|      25|     365|     380|       1
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  365-  380 (25.62/15.57)	VEYPSLSTLLKKLILR
  392-  407 (30.04/19.44)	IPYPATGPVQVPLHLR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     703.78|     230|     308|     115|     360|       2
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   30-  261 (286.65/182.01)	..........................L....ERPWTATDRF............ERIVSSIDFNDENYGIkdakaeeeNKANK..IPERSWNNIrewIRTSYTE.VCAfldFISVFK.ETKCM....................................................ailqvapsdQDAEFGGRS........LSAQALTCLGGKK....MALSNAATILLRGA..ERFHA.RNVEKIQEQQRFADGQR.PPSYHESLLELRKSWRIKLSQNSILGDV........SLRCIGSRGKEGGIFEIVEADSTQPNSEGVyESIKVKFSstmesllnKEQFTGRLRVT.IRH
  262-  360 (84.84/59.40)	LDRNNTKDWFhSLmpqksGSPLC.RQF....KRPKTQFDRLC...LAQNLLMCREIMSSLFYESSLIGI........NKFNNDLIAFSSPNKV...VTTIFPG.VQL...AISLEKaEDSPL.........................................................................................................................................................................................................................................
  422-  570 (150.89/82.51)	..........................................................................................................................esgeveypslstllkklilrqhvqswcniasipypatgpvqvplhlrgggasillnsykfpQGQNDGGIP........IITNCVTGMGNSTastwITWQNQA...LRAAphQPYSApRGQERYAYFNDWALSQQ.PLQQQAQLISDEVSVS.GLMLSSLEHDLrsnhaspeAIACILGSG.DGLLTPIVKIARHRVLRQRV.AKILTKFV........REIAEERMSITaIWH
  576-  741 (181.40/100.52)	LSSGVTVTMY.SL.....GHATCsTRFliavGIEEVSVNGVCgtsPAINIPANADLQRELL...QILKL........QELRNKMYTIQS...L...AAK.FLGwVQL...GCP...............................................................................ampsvdspLSALLLASRSGNR....LA.SVKATNLL............................vVPS..PNILNCAPS.NVKLENTGEVGSQ........KVVCIRASDKGEGL.EFLVAKSQQ......................................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05727 with Med17 domain of Kingdom Metazoa
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