<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05719

Description Uncharacterized protein
SequenceLANIFNKNISESVKNDNENEEGKAVVRGEIEASFQEIRSSLDALEKLASRWKENTDLRALLPFNLAVSAEQMDIRNDNEYGLKRVDWLVGRNEACRWLKRINYRVEAIQLGLANCGRFLRNSSFMPIPSAMDLKHLSGSHMQFSVIDVHSRNPILYIKVGEVMHCLLTFGNLYMENVIVRSLDESHCLPGYISRANRALISTIQTPTRRSHAMMELIQDQEMSRQIWPGLLPSLDQLPDNQLPSAKELDLRTPSRFITFVRITEAARNAMIHFSNAAEPSTQMVALREFCDWLATYLRLYQEPCVNCGRLLGYDASLPVLRTFVPNPTRAAALHEHCRGSNITSQKDFSIH
Length351
PositionTail
OrganismHymenolepis diminuta (Rat tapeworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Cestoda> Eucestoda> Cyclophyllidea> Hymenolepididae> Hymenolepis.
Aromaticity0.07
Grand average of hydropathy-0.287
Instability index55.96
Isoelectric point7.26
Molecular weight40002.35
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05719
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.19|      13|      14|      75|      87|       1
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   75-   87 (25.29/15.29)	RNDNEYGLKRVDW
   91-  103 (25.91/15.81)	RNEACRWLKRINY
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.89|      13|     191|     114|     128|       2
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  114-  126 (27.79/15.93)	NCGRFLRNSSFMP
  306-  318 (25.10/ 8.25)	NCGRLLGYDASLP
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.23|      22|     192|      40|      63|       3
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   40-   63 (28.97/21.95)	SLDAL..EKLASRwKEnTDLRALLPF
  233-  256 (35.26/16.83)	SLDQLpdNQLPSA.KE.LDLRTPSRF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05719 with Med27 domain of Kingdom Metazoa
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