<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05707

Description Uncharacterized protein
SequenceMNYVDQQQFIMQQGQRMQNPRMISVPTTVTPQHLHRQQRYGMAMMQPGQQPVQIASGQYVQNPQMQPRLLTMSDALSRLPPEVQQMAQQQINAETNAEKKRQVALGFIQGRVRLTQQYPGQGTMNAGGMMISVGLNQQVGMSQGNTQMVRMGTVQGGPVPYPAQNVALQTGMGQMGPTQISVQRMPNHYMASNMNGPQNIQYQSQDTGSVQNYNSQQQITLTQPSSVGPTVQQNSSLHHKGPSSVPSAVYTQHHPESTAPTHSTAGSEGDKSSDEPLYSQKLELLKPYHEHIKRLLERNRLDGQAPKSKFERLLEIMENRRKVELKLLEKLVVSVRNLIERDSLCFPLIDALRFESGDSTKTPLPDPWGDFHQYAIKVPEKVMTLVKEEKTRSKEDKGVIPMKRIKKEEDSDERISVVCQDGSRLELSQEISDQLRPYNYR
Length441
PositionTail
OrganismElaeophora elaphi
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Elaeophora.
Aromaticity0.05
Grand average of hydropathy-0.779
Instability index47.17
Isoelectric point9.18
Molecular weight49787.98
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05707
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.35|      14|      17|     216|     231|       1
---------------------------------------------------------------------------
  216-  229 (24.78/ 8.04)	QQQITLTQ..PSSVGP
  232-  247 (21.57/12.26)	QQNSSLHHkgPSSVPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     116.86|      23|      29|     138|     165|       2
---------------------------------------------------------------------------
    8-   24 (34.00/14.33)	QFIMQQ.G..........QRMQNPRMIS
  138-  164 (39.33/28.33)	QVGMSQ.GNTQMvrmgTVQGGPVPYPAQ
  169-  192 (43.53/22.53)	QTGMGQmGPTQI....SVQRMPNHYMAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.18|      16|      16|     282|     297|       3
---------------------------------------------------------------------------
  282-  297 (26.73/19.68)	LELLKPYHEHIKRLLE
  301-  315 (23.26/16.21)	LDGQAP.KSKFERLLE
  325-  340 (21.19/14.14)	LKLLEKLVVSVRNLIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.05|      14|      29|      75|      89|       4
---------------------------------------------------------------------------
   75-   89 (20.15/15.62)	ALSRLPPEVqQMAQQ
  104-  117 (23.90/13.47)	ALGFIQGRV.RLTQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.91|      11|      15|      41|      51|       6
---------------------------------------------------------------------------
   41-   51 (22.61/ 9.62)	GMAMMQPGQQP
   57-   67 (22.30/ 9.40)	GQYVQNPQMQP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05707 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GQRMQNPRMISVPTTVTPQHLHRQQRYGMAMMQP
2) LLTMSDALSRLPPEVQQMAQQQINAETNAEKK
3) MSQGNTQMVRMGTVQGGPVPYPAQNVALQTGMGQMGPTQISVQRMPNHYMASNMNGPQNIQYQSQDTGSVQNYNSQQQITLTQPSSVGPTVQQNSSLHHKGPSSVPSAVYTQHHPESTAPTHSTAGSEGDKSSDEPLYSQ
14
69
141
47
100
280










Molecular Recognition Features






MoRF SequenceStartStop




1) LRPYNYR
2) PMKRIK
435
401
441
406