<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05706

Description Uncharacterized protein
SequenceMASCEEEVLRIGRKFERMIQGTKTMDDAMELLNALSALPVDINILTKTRIGMTINDLRKKTSDEHIAKRAKALIKEWKVLLANKTGSSKGDGKDTVAKNNSSASISSTAFNESSKHLSQSQSSQKSTSSGTANSSTPGTRKQLLPDEVRNKCATMILDALLSKELPDGTLDPEDLAIRTEKKLFEVHRGTSEKYKAALRSRVFNLRDKKNLVLRENVLIGAVTPEKFAVMTADEMASDEMKAQREKFTRQAIEEYQMAVQEGTPSDMFKCGKCGKKNCTYTQVQTRSADEPMTTFVFCRECGNRWKFC
Length308
PositionUnknown
OrganismElaeophora elaphi
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Elaeophora.
Aromaticity0.05
Grand average of hydropathy-0.607
Instability index43.93
Isoelectric point9.15
Molecular weight34370.98
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05706
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.78|      16|      19|     168|     185|       1
---------------------------------------------------------------------------
  168-  185 (22.12/22.26)	GTLDPEDLAIRTekKLFE
  189-  204 (26.66/18.90)	GTSEKYKAALRS..RVFN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.64|      12|      19|     225|     236|       2
---------------------------------------------------------------------------
  225-  236 (21.28/14.28)	EKFAVMTADE..MA
  245-  258 (16.36/ 9.55)	EKFTRQAIEEyqMA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.05|      13|      25|     264|     276|       3
---------------------------------------------------------------------------
  264-  276 (27.15/14.98)	PSDMFK.CGKCGKK
  291-  304 (22.90/11.76)	PMTTFVfCRECGNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.25|      17|      18|      98|     114|       5
---------------------------------------------------------------------------
   98-  114 (26.96/17.99)	KNNSSASISSTAFNESS
  119-  135 (27.29/18.29)	QSQSSQKSTSSGTANSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05706 with Med26 domain of Kingdom Metazoa
Unable to open file!