<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05684

Description Uncharacterized protein
SequenceLQSMMRLLIKTIEDVTSRFRTYLAMGHEALNQVIDEVPPVLSASPMLNVEDVNVGVSIEQQVGAVETEISKRRSSYDEARKTTVSRREAWRRDVMLCELLDNMGDADLERRLSPSTNKHCMFLSQSLSCIRVCERCKNELIDMPESGKQCESTHIQTRNSRHPLLCTECHKRFQTVQELYLHSEICIIESFENEAVNVFSNMPSLTKSTAVFDATTHAGITAKGDDPPILIPETNASASSSRLTTLSFSAKCKVECSRFKKTQVTVPTGTTKAVPLSFVSTSHLEQRYWSSSERLQKIPFELENARILESPSGLKIYISIERKCGREGNGVISGNDGYYYGSQGALGSNATNSKRKIIGALANTNNDDIYRTKMECPACGLILYRHNFGTHYRIHTGELPFICTYCQKRFRTTSALKVHIRQESLEGAHTGEKPYSCPKCSYCCITKRNLDRHITNNHVREGERRGPRERRSRYRKDEFIVTTDDIEMGTVEESEKIDHHYVISPVEIENKNVVEEKTNDEMQGRDDNRQSVDMPVLPLLTL
Length542
PositionMiddle
OrganismBrugia timori
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Brugia.
Aromaticity0.06
Grand average of hydropathy-0.553
Instability index60.94
Isoelectric point7.30
Molecular weight61452.99
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05684
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     130.26|      26|      32|     395|     426|       1
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  163-  182 (27.87/12.47)	.....PLLCTECHKRFQTVQELYLH.
  395-  420 (50.51/39.75)	HTGELPFICTYCQKRFRTTSALKVHI
  429-  454 (51.89/28.02)	HTGEKPYSCPKCSYCCITKRNLDRHI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.78|      25|     382|      80|     104|       3
---------------------------------------------------------------------------
   80-  104 (45.15/26.31)	RKTTVSRREAWRRDVMLCELLD.NMG
  464-  489 (40.63/23.06)	RRGPRERRSRYRKDEFIVTTDDiEMG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05684 with Med7 domain of Kingdom Metazoa
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