<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05681

Description Uncharacterized protein
SequenceMEKEDIMERQEQKPVMNSAQCDKYSAVDLSLEEVEEEIRLEKIRQTSLKFSWDYLSQLLRRNLMEKRFVLSADDKEDLMQAAADMRKYMPSDSDRDLSTHLRHLAESLSSDFQAHPGYYKIRNADFSLEITVSLDGQQITSCSVSWFGERAVEAQALRLYVSRNRWDLIHTALTAMFHLVPSDLSRDEKIYCLRSLEYAEKDLLNMSGSAPSIFEQINGGILGLCKPRTESTPFTIYPFVEPVIFLDAASGGIISPTDEQDTTSPLIVSVLYDVEPYLQLCVVSSSTPNFFSDTTLFAHGEWRNAVSGRQLPAAFCLRFSRPIIFSSAAIKKLSKIASVQLNVEGSYNLYQYLLNENEECHDLFVRLPGCSTQHYIFDDSMKSSQEDGILRQIPFAHLQDVVFLVSIIRTQLAHNAFFESLVRAHSRSACVDENVVDIHIASSYIDCFDLQFYLKKNFFIARVAVSPSNINVSLECVINGAVLPESQHATAILAKSWSLAVMMRSVLRRGGAISLAALEKPFVMSENVDNNCDVKISQSWLFVPNITDNSINYNKTEHEYVVDERISLNCSCDSNALGRQSPLSLLALFKELEKIEELIPPQKPMNGAQQCTAPPRNEMLAPRTSRIHSENTMTINAFSVLVHYFC
Length646
PositionMiddle
OrganismBrugia timori
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Brugia.
Aromaticity0.09
Grand average of hydropathy-0.149
Instability index54.24
Isoelectric point5.24
Molecular weight73019.27
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05681
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.62|      30|      31|     213|     242|       1
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  213-  242 (55.88/41.18)	IF.EQINGGILGLCKPRTESTPFTIYPF..VEP
  244-  276 (41.74/28.85)	IFlDAASGGIISPTDEQDTTSPLIVSVLydVEP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     156.01|      49|      89|      67|     117|       2
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   67-  117 (78.37/66.23)	RFVLSaDDKEDLMQAA.ADMRKYMPSDSDRDLSTH.LRHLaESLSSDFQAHPG
  158-  208 (77.64/55.94)	RLYVS.RNRWDLIHTAlTAMFHLVPSDLSRDEKIYcLRSL.EYAEKDLLNMSG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     269.17|      87|     194|     281|     371|       3
---------------------------------------------------------------------------
  281-  371 (143.82/106.20)	CVVSSST.PNFFSDTTLFAHGeWRNAVSGRQL...PAAFCL.RFSRPIIFSSAAIKKLS.KIASVQLNVEgsyNLYQYLLNENEECHDLFV..RLP.GCS
  476-  571 (125.35/80.82)	CVINGAVlPESQHATAILAKS.WSLAVMMRSVlrrGGAISLaALEKPFVMSENVDNNCDvKISQSWLFVP...NITDNSINYNKTEHEYVVdeRISlNCS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.97|      19|     589|       1|      21|       4
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    1-   21 (31.10/26.51)	MEK.EDIMerQEQKPVMNSAQC
  592-  611 (31.87/20.17)	LEKiEELI..PPQKPMNGAQQC
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.55|      22|      95|      28|      52|       5
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   28-   52 (32.64/26.02)	DLSLEEVeeeIRLEKIRQTSLKFSW
  125-  146 (39.91/23.91)	DFSLEIT...VSLDGQQITSCSVSW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05681 with Med1 domain of Kingdom Metazoa
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