<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05661

Description Uncharacterized protein
SequenceLNSYVNKVIVLGNFTSLSSVAHQINPVPSSSIDSDTISNSYDGAGTISKAAVDKLWSEWLQFFCLIVNVERNLGSADTVGYIGYTENTSPAKNSLPKMVLVDVDGVHMWYPSSLIVVQASDDLLLRQNEKTINDDDSDFFNSGSNSSSFTARTPPATGGHARLRSTPSFRKRKKRLSECDTGSNAERHNAMYGTMVNGARAAQRFFEESFIAPASSRRKESTESPSSSGLGLLMSAAANDDDCRWNFTDGMRRKDREEGCGCHHCRLQQSSSATALPNLPSQCITLQQALVLTRSLISHVVHPL
Length304
PositionMiddle
OrganismBrugia timori
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Brugia.
Aromaticity0.07
Grand average of hydropathy-0.384
Instability index57.58
Isoelectric point6.77
Molecular weight33201.67
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05661
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     175.22|      50|     103|     133|     185|       1
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  133-  185 (83.62/52.72)	NDDDSDF.FNSGSNSSSftaRTPPATGGHARLRSTPSFRKRKKRLSECDTGSNA
  239-  289 (91.59/50.97)	NDDDCRWnFTDGMRRKD...REEGCGCHHCRLQQSSSATALPNLPSQCITLQQA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.30|      27|     184|      24|      51|       2
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   24-   51 (42.63/30.03)	INPVPSSSIDSdTISNSYDGAGTISKAA
  211-  237 (45.67/27.50)	IAPASSRRKES.TESPSSSGLGLLMSAA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05661 with Med13 domain of Kingdom Metazoa
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