<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05657

Description Uncharacterized protein
SequenceLHRQQRYGMAMMQPGQQPVQIASGQYVQNPQMQPRLMTMSDALSRLPPEVQQMAQQQINAETSAEKKRQVALGFIQGRVRLTQQYPGQGTMNSGGMMISVGLNQQVGMAQGNTQMVRMGTVQSGPVPYPAQNVSLQTGMGQMGPAQVSVQRMPGHYMTSNMNAPQNIQYQSQDPGNVQNYNPQQQITLTQPSSVGPTLQQSSSLHHKGPNSVPTAIYTQHHPENATATHSTISSKGDKSSDEPLYSQKLELLKPYHEHIKRLLERNRLDGQAPKSKFERLLEIMENRRKVELKLLEKLVVSVRNLIERDSLCFPLIDALRLESGDTPKTPLPDPWDDFHQYAIKVPEKVMNLVKEEKTKSKESKGVIPVKRIKKEEDSDGLFSYLY
Length386
PositionTail
OrganismBrugia timori
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Brugia.
Aromaticity0.05
Grand average of hydropathy-0.730
Instability index48.82
Isoelectric point9.39
Molecular weight43365.98
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05657
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     106.76|      25|      26|     104|     128|       1
---------------------------------------------------------------------------
   56-   85 (27.42/13.91)	QQI....NAetsAE.KKRQ.VALGFIQ.GRVrltqQY
  104-  128 (49.28/30.77)	QQV....GM...AQ.GNTQMVRMGTVQSGPV....PY
  131-  156 (30.05/15.94)	QNVslqtGM...GQmGPAQV....SVQRMPG....HY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.10|      23|      26|     197|     220|       2
---------------------------------------------------------------------------
  197-  220 (37.14/21.96)	TLQQsSSLHHKGPNSVPTAIYTQH
  226-  248 (38.96/19.26)	TATH.STISSKGDKSSDEPLYSQK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05657 with Med15 domain of Kingdom Metazoa
Unable to open file!