<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05649

Description Uncharacterized protein
SequenceMETVEAMVGCGNWKEGIFQTFTHLREFLRFQRRRPSSIVLRPLSCSLWSSGMSLRAQFGSAFAQFQKDVLKNETGIFPTFLERTAVGCVVELKYGVLFKKQVVFTQKMLMIENAGVVEQVLFVAPHEEWSFYTDLGEKRVDLRTTSQYVVYQKLSVEANLHLMQTINTQEIRWTAQILHQLSSAFRLFQRIFDMTCRRCKEGMKEFLPPLIFDFRNLKNALHETCR
Length226
PositionTail
OrganismAngiostrongylus costaricensis (Nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Metastrongyloidea> Angiostrongylidae> Angiostrongylus.
Aromaticity0.12
Grand average of hydropathy-0.117
Instability index40.55
Isoelectric point9.21
Molecular weight26409.46
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05649
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.39|      21|      27|     172|     197|       1
---------------------------------------------------------------------------
  176-  196 (37.42/23.43)	QILHQLSSAFRLFQRIFDMTC
  205-  225 (34.97/15.49)	EFLPPLIFDFRNLKNALHETC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.53|      10|      76|       8|      18|       2
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    8-   17 (20.68/12.57)	VGCGNWKEGI
   43-   52 (19.86/ 6.66)	LSCSLWSSGM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05649 with Med27 domain of Kingdom Metazoa
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