<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05646

Description Uncharacterized protein
SequenceMMFNQQHMIGRQMGQMGVQRQMYTQDSGMSQQSQMQMHFSQQQQMQQMSQQQMSQMPQLQLQQQQQPSVGHQQQMQMGMQQHLSGQQMGIQQQQQQQQQQQMVQQQSIQQHMQQTQQMSQQQMHSGQTQQQLTPGGGPGSQPPGSTLAVASAGGPTSVGPMSVQPHTPMNPSSQQAIAQPSSVQPGPPSVAPGTPASNQPPPQAPTMGEPADLYLQDPVAHSKQLIMKDLRFCIVDLNRRAGEALKDLKAGNVPSNSNEYLKAMDNLFAVCDEIEGNLVLVCETQKQMSRMEKIFDKDAMKFGEQHPNYSDSKARNVGSEDDSTAYFSAVNTYIDQTRQLQAAFDRAFSHVGRTLETIRRRQNMSSNAEQVVKMEE
Length376
PositionTail
OrganismAngiostrongylus costaricensis (Nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Metastrongyloidea> Angiostrongylidae> Angiostrongylus.
Aromaticity0.04
Grand average of hydropathy-0.887
Instability index75.72
Isoelectric point6.20
Molecular weight41965.61
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05646
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.07|      16|      19|      25|      43|       2
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   25-   43 (29.34/12.69)	QDSGMSQQsqmQMHFSQQQ
  114-  129 (29.73/ 6.82)	QTQQMSQQ...QMHSGQTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.23|      12|      15|     227|     238|       6
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  227-  238 (22.47/15.50)	MKDLRFCIVDLN
  245-  256 (20.75/13.91)	LKDLKAGNVPSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.66|      10|      57|     134|     143|       8
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  134-  143 (24.08/ 9.18)	PGGGPGSQPP
  192-  201 (20.58/ 6.97)	PGTPASNQPP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05646 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MMFNQQHMIGRQMGQMGVQRQMYTQDSGMSQQSQMQMHFSQQQQMQQMSQQQMSQMPQLQLQQQQQPSVGHQQQMQMGMQQHLSGQQMGIQQQQQQQQQQQMVQQQSIQQHMQQTQQMSQQQMHSGQTQQQLTPGGGPGSQPPGSTLAVASAGGPTSVGPMSVQPHTPMNPSSQQAIAQPSSVQPGPPSVAPGTPASNQPPPQAPTMGEPADLYLQDPVA
1
220










Molecular Recognition Features






MoRF SequenceStartStop




NANANA