<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05642

Description Uncharacterized protein
SequenceMVACAAVATHPPISLAVPMTSCALTVEQLKQHLLAAVENGKSEVACDVLSELEKSSITKEILESTRIGATVNEVRKKTAETFPVVSKRCRALIKAWQKLVEVRSVSSATSSANGTPNLVSPSLAKLSRRVTPCTPINRRVSSTGLTGSAASSATVSPANGSYAPKQLTSPSNGVIHKTQSVGTEVIQRGEDPRNGKRKLDDGNSNAMTTSSGMRRTKTAIGSLVSPVTPTVSVLAARKAVQSTKDLVAELSQNLPEHMSIDSSIREHEERVKREQQDEEYAMQLYGGASASAPHAQPERKKRKYERKLKPQESPVDSTPGYLVSSGSCRLIIRLPRVAPVKEEPDNEVDHNSCPMLGATFSRPESSVAGDTVNQSDGKIDWLAMLPSMEELQAKVNDMKAEDENRKQAQHHPTKAYLIRVRDRNVLALPYLDVPTVPDFIQYRYPNPAQYYAEENFIYGAPRGT
Length464
PositionUnknown
OrganismAngiostrongylus costaricensis (Nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Metastrongyloidea> Angiostrongylidae> Angiostrongylus.
Aromaticity0.04
Grand average of hydropathy-0.502
Instability index53.36
Isoelectric point9.06
Molecular weight50510.64
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP05642
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.71|      22|      22|     310|     331|       1
---------------------------------------------------------------------------
  310-  331 (40.07/21.08)	PQESPVDSTPGYLVSSGSCRLI
  335-  356 (41.63/22.15)	PRVAPVKEEPDNEVDHNSCPML
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05642 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KDLVAELSQNLPEHMSIDSSIREHEERVKREQQDEEYAMQLYGGASASAPHAQPERKKRKYERKLKPQESPVDSTPG
2) PVKEEPDNEVDHNSCPMLGATFSRPESSVAGDTVN
3) RVTPCTPINRRVSSTGLTGSAASSATVSPANGSYAPKQLTSPSNGVIHKTQSVGTEVIQRGEDPRNGKRKLDDGNSNAMTTSSGMRRTKTAIGSLVSPV
244
339
129
320
373
227










Molecular Recognition Features






MoRF SequenceStartStop




1) HAQPERKKRKYERKLKPQE
2) QYYAEENFIYGA
3) STPGYLVSSGSCRLIIRLPRV
4) VPDFIQYRYP
5) YAMQLYG
6) YLIRVR
294
449
317
436
280
416
312
460
337
445
286
421