<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05636

Description Uncharacterized protein
SequenceMLTLSGPAASAGAAPVQAAAPATFQQQQPGAAPPSSCLATSGASSSDGGASNITSGTSSEYMVKPSSQEGLKLTINKTGSSKSSSSGASSSSIGMGKTKGPSSGSSGGASASASSSSYAKKQHTGLKPGVNSGPASKKATASTGGATTSGGASSSSSKHLFQKANSSGNLSSKLSGSASGGGVLLTKSNSTNSFQEHNAPRRRPSMGGLASSGGGAGGAPRKGGSSAGGGSSSGAVSPAALTGSMSQPPPRFDHHTDMMTILQYASPTMAASMEGFIKGLHNKFQIPKLSQRGSGGSGRSTPSSTEQTSTTATSTVVSATTSSALPDPDTKPSAAPPPPGNDLLLNLSTTAPMPSGDGIDEELLASLAGE
Length370
PositionMiddle
OrganismDrosophila pseudoobscura pseudoobscura (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila> Sophophora.
Aromaticity0.02
Grand average of hydropathy-0.428
Instability index60.27
Isoelectric point9.82
Molecular weight35658.61
Publications
PubMed=15632085
PubMed=17994087
PubMed=23185243

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05636
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     124.15|      33|      35|     100|     133|       1
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   27-   64 (43.93/11.12)	QQPGAAPP.SSClatsGASS.SDGGASniTSGTSSEYMVK
   93-  121 (36.90/ 8.01)	..IGM......G.ktkGPSSGSSGGAS..ASASSSSYAKK
  122-  158 (43.31/13.25)	QHTGLKPGvNSG.pasKKATASTGGAT..TSGGASSSSSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.92|      13|      15|     207|     219|       2
---------------------------------------------------------------------------
  207-  219 (24.37/ 6.42)	GGLASSGGGAGGA
  223-  235 (25.54/ 7.14)	GGSSAGGGSSSGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.96|      13|      17|     335|     347|       4
---------------------------------------------------------------------------
  335-  347 (26.15/12.42)	APPPPGN....DLLLNL
  351-  367 (18.80/ 7.07)	APMPSGDgideELLASL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.14|      14|      17|     301|     314|       5
---------------------------------------------------------------------------
  301-  314 (23.25/ 9.47)	TPSSTEQTSTTATS
  320-  333 (24.89/10.62)	TTSSALPDPDTKPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.72|      20|     167|       4|      26|       7
---------------------------------------------------------------------------
    4-   23 (30.89/10.80)	LSGPAASAGAAPVQAAAPAT
  174-  193 (32.83/15.64)	LSGSASGGGVLLTKSNSTNS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05636 with Med1 domain of Kingdom Metazoa
Unable to open file!