<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05631

Description Mediator of RNA polymerase II transcription subunit 31
SequenceMNSYATVESEEQQKRRWQIELEFVQCLSNPNYLNFLAQRGYFKDQSFINYLKYLQYWKEPDYAKYLMYPMCLYFLDLLQYEHFRREIVNSQCCKFIDDQAILQWQHYTRKRIKLMENAAAAQQQQQQQQQQQLQQSNGGEAATAGEAAATGGMMATANGNGTASAAEAQPLGGSVQRGEPGQAQAVIPQQQQQQINGLATASNIKLELN
Length209
PositionMiddle
OrganismDrosophila pseudoobscura pseudoobscura (Fruit fly)
KingdomMetazoa
Lineage
Aromaticity0.11
Grand average of hydropathy-0.685
Instability index57.71
Isoelectric point5.74
Molecular weight23865.45
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05631
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.66|      19|      62|     121|     142|       1
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  121-  142 (30.25/16.97)	AQQQQQQQQQQQLqqsNGGEAA
  183-  201 (34.41/13.39)	AQAVIPQQQQQQI...NGLATA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.73|      15|      18|      62|      76|       2
---------------------------------------------------------------------------
   62-   76 (30.52/22.16)	YAKY...LMYPMCLYFLD
   80-   97 (24.21/16.24)	YEHFrreIVNSQCCKFID
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05631 with Med31 domain of Kingdom Metazoa
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