<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05623

Description Uncharacterized protein
SequenceMKSIDEVLQLSQVYSQKVWEPGVVLVDFVFSIVWQLLAASLDDEGLLDHTAENKPRWLSRSHDMNIDGPDSFTEKKTEQAEGFQKKNTAIAIEIIAEFLQQKMTSRILSLVHWNMSSHWGSFIHQMQLLVSNSSVFRNLKHITAESLLRWTQNIHEVVSHELKKKSKMETNLVTPAGSLMPLAGQSYGDSWSSLWLPIDLILEDALDGAQVAAFSAIEIITGMVKTLHVVNGTMWHNTFLGLWVAALRLVQRVGIILTEKERDLKEGPIPRLDTCMCMLLSITTLVVTNIIEEEEGQLIEEPEHSPTNQGKNKLALGKCHGELITSLQLLGDYESLLTPPQLVLVEANQAAAKAIVFLSGNPVGSGCFKYMSTNDMPMKCSGNLRHLIVEACIAKKLLDTSAYLWPGYVNTCSNQIPCSISNHVSGWSSLMEGSQLTPALVNVLVATPASSLAEIEKIYEIAINGSDEEKISAATILCGASLVRGWNVQEHTVLFITKLLSPIDPPNYSGAESHLTSQAPFLNVLLIGISSMDCVHIFSLHGLVPLLAPGLMLICEVFGSCVPDSSWTLASGEKLTHWEVFCNAFTLLLRFWRFDHLPIEQVRSDATTPPFGSLPSPECLLLVRNCKLASFGRTEKDQQRLKRWPKILCFSVEPVFMDSFPKLNFWYRKHQECIASFRSGLVPGRPVNQIVDALLSMMFKKVSNGVKPSTPTTSGSSNSSGNALDDALMKLKVPAWDILEAIPFVLDSALTSCAYGKTSTRELATGLKDLADFLPASLVTIASYFSAEVTRGIWKPSFMNGTDWPSPAANLAHIEQQIKKILAATGVNVPSLDIDGDSPATLPFPLAAFVSLTLTYKLDKATEPFLALIAPAMNAVASGCPWPSLPIVTSLWIQKVKRWSNYFVLSASSTVFHHNKDAIAQLLKSCFTSTLGLGYGSIYNNGGVSALLGDGSVSRISNGISPVAPGILYIRVYRSIGDITLLIKEIVPILMLSVTDIASSDLMPKGVVRKPKKTKFGVKYGQVSLARSMARVKHAALLGASLVWISGGQKLIQYLMRETLPSWFLSATMFEQDGGESGVMVAKLKGYALAFFVFLSAAFAWGIDNSYSPKQRAEVVGLHLKFLASTLNRNGAMFSRCTTWKAYVSGLVSLMVGQAPSWVREVDADLLKRLSWGLSQMDEHKLALRLLEIGGIGVMGAAAEMIIGFEHRS
Length1209
PositionTail
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.08
Grand average of hydropathy0.157
Instability index41.98
Isoelectric point6.85
Molecular weight132478.22
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05623
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     250.77|      57|      77|     764|     820|       1
---------------------------------------------------------------------------
  363-  395 (26.70/10.66)	..............................VGSGC..FK..YMS....TNDM.........PM.KcSGNLRHliVEACIAK
  397-  458 (53.24/29.01)	...LLDTSAY....LwPGYVNTCSNQIPCSISNHVsgWS.SLME....GSQLtpalvnvlvAT.P.ASSLAE..IE.KI..
  764-  820 (101.94/62.68)	ATGLKDLADF....L.PASLVTIASYFSAEVTRGI..WKPSFMN....GTDW.........PS.P.AANLAH..IEQQIKK
  840-  898 (68.89/39.83)	ATLPFPLAAFvsltL.TYKLDKATEPFLALIA.......PA.MNavasGCPW.........PSlP.IVTSLW..I.QKVKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     167.58|      54|     251|     644|     711|       2
---------------------------------------------------------------------------
  580-  643 (81.15/72.01)	VFCNAFTlLLRFWRFDHLP.IEQVRSdATTP..PFGSLPSPECLLLvrncklasFGRTEKDQQRLKR
  655-  711 (86.43/63.84)	VFMDSFP.KLNFWYRKHQEcIASFRS.GLVPgrPVNQIVDALLSMM........FKKVSNGVKPSTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     190.14|      58|      91|       4|      63|       3
---------------------------------------------------------------------------
    4-   63 (95.55/75.19)	IDEVLQ...LSQVYSQKVWEPGVVLVDFVFSIvwQLLAASLDDEGLLDH.TAENKPRWLSRSHD
   95-  156 (94.59/66.46)	IAEFLQqkmTSRILSLVHWNMSSHWGSFIHQM..QLLVSNSSVFRNLKHiTAESLLRWTQNIHE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.50|      18|      78|     935|     956|       4
---------------------------------------------------------------------------
  914-  931 (29.95/19.86)	HNKDAIAQLLKSCFTSTL
  939-  956 (29.55/12.48)	YNNGGVSALLGDGSVSRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.33|      36|      94|    1025|    1063|       5
---------------------------------------------------------------------------
 1025- 1063 (53.79/45.69)	LARSMARvkHAALLGASLVWISGGQKLIQyLMRETLPSW
 1123- 1158 (65.54/43.24)	LASTLNR..NGAMFSRCTTWKAYVSGLVS.LMVGQAPSW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05623 with Med33 domain of Kingdom Viridiplantae
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