<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05617

Description Uncharacterized protein
SequenceMSQHSSSSVVALAIKGDKKSKYVVQCALNKFVPEGMIIFKLIHVHAVGNVIPLSQVRNDVATAFKKEVEWQTNQMLLPFKIMCEQRKVHVDVVVIESDDVATAVAEEVAKGAITKLVVGASSHGLFKSKQKGMSTKISVCTPRFCTIYAISKGKLSIRPSDMPIGGSIIDDASESETSLSTSSSSNYNSTSQTESASVSSYAGLQSSSLTTQRFQALSSINSALLSTNPSFPDTNHSRGQSLDLGTENTATSSARNSDIDHALSRVSSCKSFISDTESWMYDQNSSKEVQLETTLPSPNRQAKFNLELEKLRIELRHAQGLHAVAQSEKIEASRKLNELSKRRSEETMKTKEIIAKEEKAKDLARLERDKYQDASREAAYLKECAEREAAERKETELKAILAAKETKKLEGALSGSTPQYRKFAWDEIVLATSSFSEDLKIGMGAYGIVYKCNLYHTNVAVKVLTLNPNENRKRKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGNLEDRLLRKNNTSPIPWFERFRIAWEVASALAFLHSSKPEPIIHRDLKPANILLDRNLVSKIGDIGLSTVLHSDNLSTMYKDTAPVGTLSYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIALAHKVETAIDGGNLTDILDTEAGAWPYQETLELALLGLSCAELRRRDRPDLQDHVLPTLERLKQVFDRAQHSASIVTIKSKPPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWLEENHKSPMTNMALPHKHLIPNYTLLSAILEWKSRES
Length791
PositionTail
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-0.356
Instability index43.82
Isoelectric point7.31
Molecular weight88048.32
Publications
PubMed=20075913

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05617
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.24|      33|      39|       4|      42|       1
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    4-   42 (49.20/48.36)	HSSSSVVALA.IKGDkkskyvVQCALNKFVP....EGMIIFKLI
   45-   82 (46.04/31.48)	HAVGNVIPLSqVRND......VATAFKKEVEwqtnQMLLPFKIM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.36|      49|      60|     299|     349|       2
---------------------------------------------------------------------------
  299-  349 (75.25/53.17)	NRQAK..FNLELEKLRIELRHAQGLHAVAQSEKIEasRKLNELSK.RRSEETMK
  357-  408 (69.11/43.00)	EEKAKdlARLERDKYQDASREAAYLKECAEREAAE..RKETELKAiLAAKETKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     166.20|      53|      71|     141|     200|       5
---------------------------------------------------------------------------
  141-  200 (81.03/64.17)	TPRFCTIYAISKGKLSIRPSdMPiggsiiDDASESETSL.....STSSSSNYNSTSQTESASVSS
  211-  268 (85.16/50.80)	TQRFQALSSINSALLSTNPS.FP......DTNHSRGQSLdlgteNTATSSARNSDIDHALSRVSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.92|      47|      71|     565|     611|       6
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  565-  611 (77.40/53.69)	ILLDRNLVSKIGDIGLSTVLHSDNLSTMYKDTAPVGTLSYIDPEYQR
  638-  684 (76.52/52.99)	IALAHKVETAIDGGNLTDILDTEAGAWPYQETLELALLGLSCAELRR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05617 with Med32 domain of Kingdom Viridiplantae
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