<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05616

Description Uncharacterized protein
SequenceMDLEGKKFGKGNREFGSTRDLINQNRLWLYYKFFCKKSLPVSISETHYLHNVVGDTKIRKGEGMELDQLCKNMDTSEKKTCMCPFDLDVLSEAFHMRDMNPVHLSSTCCADVLYKGQKGLPNAVPKLENQSRDHERKNKKVKDKGEKYRKQKHRLHRINNGSCIENIRIRPHDPHPLQLKNQQDKKRRAEKSNNDPSVCKR
Length201
PositionHead
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-1.113
Instability index39.01
Isoelectric point9.57
Molecular weight23495.73
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
transcription factor binding	GO:0008134	IBA:GO_Central

GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05616
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.88|      24|     108|      47|      72|       1
---------------------------------------------------------------------------
   47-   72 (34.75/30.85)	HYLHNV.....VGDTKIRKGEGMELdQLcKN
  153-  181 (40.12/24.29)	HRLHRInngscIENIRIRPHDPHPL.QL.KN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05616 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LPNAVPKLENQSRDHERKNKKVKDKGEKYRKQKHRL
2) NNGSCIENIRIRPHDPHPLQLKNQQDKKRRAEKSNNDPSVCKR
120
159
155
201










Molecular Recognition Features






MoRF SequenceStartStop




1) LKNQQDKK
2) NGSCIENIR
179
160
186
168