<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05609

Description Uncharacterized protein
SequenceMQRYHAGSCTSAVNNSTIGGPSTRDAGRSDSSSLPANFSVSSRRQPPLNPYKLKCDKEPLNSRLGAPDFHPQTPNCPEETLTREYLQSGYRDTVEGLEEAREISLTQVPHFNKKVVLSCKEAIRKRLRAINESRAQKRKAGQVYGVALSGSQLGRSGIFPELRPYGEDFQKKWIEGLSQQHKRLRSLADHVPHGYKRTSLLEVLIRNNVPLLRATWFIKVTYLNQVRPGSVGISSGAADKIQLSRSDVWTKDVINYLQTLVDEFLSKNALHSASHGRERSPQMSYTGSLQNKNDPLLSVSDGEGPSLHFRWWYIVRLLQWNHAEGLLHPSLVIDWVFNQLQEKDLLEVWQLLLPIIYGFLETIVLSQTYVRTLAGLALHVIRDPAPGGSDLVDNSRRAYTAYAVIEMLRYLILVVPDTFVALDCFPLPSSVISHTMNDGNFVLKSTEAAGKIKNSSDDFGHIISCIQKHTEDLVKAASPGYPGHCLAKVAKALDKALVLGDLRVAYKFLFEDLCGGTVSEGWISKVSPCLRLSLKWFGTVNTPLIYSVFFLCEWATCDFRDFCSTPPRDIKFTGRKDLSQVHIAVRLLKMKIRDVKISQKQTNENHRASHLAKHSSQRHNWNYVGNVSRLRSSSKSTGSSVFESPGPLHDIVVCWIDQHVVQKGEGPKRLNLFMVELIRAGIFYPLAYVRQLIVSGIMDVNVNVVDLERQRRHYRILKQLPGCFIHDVLEESGIVEGSQLKEALQIYLNERRLILRGHLSVSCGSNLSALKKKKYPASTKDEVFAVPIDQRNVISTTISSKNAKDTNIEELRTAISVLLQLPNCSSNLSTTGDESEGSDRRAIGSPYGKIDPVEGTPGCEECSRAKRQRLSEERSTFVQGHSPVQSDDDDTWWVKKGMKSPEPLKVDQPQKSTKQVTKSRLKNVRKTQSLAQLAASRIEGSQGASTSHVCGNRVSCPHHKTAMDGDGQRSVDSIRTSHFGDIVSIGKALKQLRFVEKRAIAAWLLTVVRQVIEDVEKNIGKVGQFSKPFPVVDDRGSIQWKLGEDELSVILYLMDISDDLVSVVKFLLWLLPKVLNSPNSTIHSGRNVVMLPRNVENQVCDVGEAFLLSSLRRYENILVAADLIPEALSSAMHRVATVIASNGRVSGSGALAFARYLLRKYSNVASVIEWEKTFKTTSDARLSSELESGRSVDGELGLPLGVPAGVEDHDDFFRQKISGGRLPSRVGAGMRDIVQRNVEEAFHYLFGKDRKLFAAGTPKGPTLEKWDNGYQIAQQIVMGLIDCIRQTGGAAQEGDPSLVSSAVSAIVGSVGPTLAKMPDFSSGNSHSNTMPATNALNYARCILQMHIACLCLLKEALGERQSRVFDIALATEASNALAGVFSPSKASRSQFPMSPEAHDSSNTISNDMGSNSSKVVAKTTKIAAAVSALLVGAIIYGVTSLERMVTVLRLKEGLDVVQFVRSTRSNSNGNARSLMAFKVDNSIEVHVHWFRLLVGNCRTICEGLVVELLGEPSIMALSRMQHMLPLNLVFPPAYSIFAFVRWRPFILNATVREDMNQIYQSLTMAITDAIKHLPFRDVCFRDCQGLYDFMAADASDSEFATLLEFNGSDMHLRSTAFVPLRSRLFLNAMIDCKMPQSIYTKDDGSRMSGPGESKIKFTDSESKLQDMLVHVLDTLQPAKFHWQWVVLRLLLNEQALIEKLENRDVSLADAIKLSSPSTEKAAAASENEKNFIQILLTRLLVRPDAAPLFSELIHLFGRSLEDSMLSQAKWFLAGQDVLFGRKTIRQRLHNIAVKKNLSVKTQFWEPWGWCSLSTDPLTVKGDNKKFDSTSLEEGEVVEEGMDLKRCQLQVTERALIEMLLPCIDQSSDESRNSFASDMVKQLSYIEQQITAVTGGSKSVGSAPPGVEGQPNKVNNRKNMRGGSPALTRRQTVATDSSPPSPAALRASMSLRLQLLLRFLPILCTDREPSVRSMRQFLATVIFRLLGSRVVHEDVDISVNAVPSLSIREAESSSEVASAAFVDSSSGSLFDRLLLVLHGLLSSYPPSWLRAKPVSKTISEPTREISGIDRELLETLQNDLDRMQLPDTIRWHIQAAMPILIPSMRCSLSCQPPSISNSALVCLQPSITNPGSNSSSSTIPQRNPVLSRVASNASGKSKQQDNDLEIDPWTLLEDGTGSYSSAGNTASIGSGDHANIRATSWLKGAVRVRRTDLTYVGAVDDDG
Length2222
PositionKinase
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.07
Grand average of hydropathy-0.225
Instability index49.56
Isoelectric point8.83
Molecular weight245848.03
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05609
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     341.97|     116|     365|     825|     943|       1
---------------------------------------------------------------------------
  727-  776 (41.88/19.95)	........................................................................DVLEES.GIVEGS..QLKEalQ.IYLNERRLILRGHLSVSCGSNLSALKKK..KYP
  782-  901 (187.83/126.85)	EVFAVPIDQRNVISTTISS.KNAKDTniEELRTAISVLLQLPNCSSNLSTTGDE.SEGSDRRAI.GSPYGKIDPVEGTPGCEECS..RAKR..Q.RLSEERSTFVQGHSPVQSDDDDTWWVKKgmKSP
  902-  998 (112.27/72.09)	EPLKVDQPQKSTKQVTKSRlKNVRKT..QSLAQLAASRIEGSQGASTSHVCGNRvSCPHHKTAMdGDGQRSVDSIRTSHFGDIVSigKALK..QlRFVEKR...........................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|    1245.09|     410|    1660|     105|     546|       4
---------------------------------------------------------------------------
  105-  546 (630.35/464.70)	LTQVPHF.NKKVVLSCKEAIRKRLR..AINESRAQKRKAGQVYG.VALSGSQLGRSGIFPELRPYGEDFQKKWIEGLSQQHKRL....RSLADHVPHGYKRTSLLEvliRNNVpllrATWFIK.VTYLNQ....VRPGSVGISSgAADKIQLSRSDVWT.KDVINYLQTLVDEFLSKNALHSASHGRERSpQMSYTGSLQNKNDPLLsVSDGEgPSL....HFRWWYIVRLLqwnhAEGLLHPSlvIDWVFNQLQEKDLLEVWQLLLPIIYGFLETIVLSqTYVRTLagLALHVIRDPAPGG.......SDLVDNSRRAYTAyavIEmlRYLILVVPDTfvaLDCFPLPSSVISHTMNDGNFVLKSTEAAGKIKNSSDDFGHIIsCIQKH.TEDLVKAASPGYP..GHCLAKVA.KALDKA.lvlGDLRVAYKFLFEDLCGGTVSEGWISKVSPCLRLSLK...WF.GTV...NTPLIY
 1765- 2214 (614.74/372.40)	LSQAKWFlAGQDVLFGRKTIRQRLHniAVKKNLSVKTQFWEPWGwCSLSTDPLTVKGDNKKFDSTSLEEGEVVEEGMDLKRCQLqvteRALIEMLLPCIDQSSDES...RNSF....ASDMVKqLSYIEQqitaVTGGSKSVGS.APPGVEGQPNKVNNrKNMRGGSPALTRRQTVATDSSPPSPAALRA.SMSLRLQLLLRFLPIL.CTDRE.PSVrsmrQFLATVIFRLL....GSRVVHED..VDISVNAVPSLSIREAESSSEVASAAFVDSSSGS.LFDRLL..LVLHGLLSSYPPSwlrakpvSKTISEPTREISG...ID..RELLETLQND...LDRMQLPDTIRWHIQAAMPILIPSMRCSLSCQPPSISNSALV.CLQPSiTNPGSNSSSSTIPqrNPVLSRVAsNASGKSkqqdNDLEIDPWTLLEDGTGSYSSAGNTASIGSGDHANIRatsWLkGAVrvrRTDLTY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05609 with Med12 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GSKSVGSAPPGVEGQPNKVNNRKNMRGGSPALTRRQTVATDSSPPS
2) GSNSSSSTIPQRNPVLSRVASNASGKSKQQDNDLEIDPW
3) LSEERSTFVQGHSPVQSDDDDTWWVKKGMKSPEPLKVDQPQKSTKQVTKSRLKN
4) YHAGSCTSAVNNSTIGGPSTRDAGRSDSSSLPANFSVSSR
1895
2130
870
4
1940
2168
923
43










Molecular Recognition Features






MoRF SequenceStartStop




NANANA