<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05608

Description Uncharacterized protein
SequenceMDSNNWRPNQGTNPTMDTSDWRAQLPIDSRQRIVNKIMKTLKKHLAVSGPDGLHELRKIAQRFEDKIFTAATSQTDYLRKISLKMLTMETKSQNTLANNMPPNQVGPSHKPPDQGLVLQSQVHNLGQQHSIPLPGQLQPHQQLLSQNVQNNVASQPNLPPVSSLAQTPSQNIVQNSNIQNITGPNSVGTTISQNSNLQNMFPGSQRQMPGRQQIVPPQNSQQYLYQQQFKQKLQLQSQMQQQQQNLLQPNQLQSSQQSIMQTSSVMQPSMMQTSSLSSIPQNQQSTNVQQPMQSMPQQHSQVIRHQQQTAVTHQPSLPSQQQQQLMGHQPNTTNMQHAQMLGQQNNVGDIQQPQRMLSQQSNLTNLQQRQQLINQQNNPANIHQQQFGNNGPGLQQQHLLGHESGNADMQTSHHSTHMLQQPKVPMQQQSQQNTSNLLLPHSQQPQPLGSQQQLMPQIHTQSAQLQQQLGLQQQPNPSQRDMQQRIQASGSLLQQQNVLDQKKQLYQTQRTLPETSATSLDSTAQTAQPSGADWQEEVYRKLQTMKESYLPEMNEMYQKIANKLQQHDSLPQQPKSDQIDKLRAYKTMLERMMALLQIPKNNILPNFKEKLGSYEKQIINLINSNRPRKGMNSVQAGQLPPTHMSSMQQPQSQVTQVHSHENQMNPQLQSTNLQGSVPTMQQNNIASLQHNALAGVSTGQQNMMNSMQPVTNLDSGHGNSMNSLQQVPMSSLQQNPVSTPQQTNINSLPSQGGANMIQPNALQSGSSALQHQLKHQQEQQMLQSQQFKQQYQQRQQLMQRQQLLQQQQLHHPAKPQLSSQLQTHQMPQLHQMNDINDIKMRQGMGVKSGVFQQHLTSGQHSTYSHQQLKQGSAFPVSSPQLLQAASPQIQQHSSPQVDQQNHLPSKAKVTTPLQSSNSPFVGPTPSPPLAPSPMPGESEKPIPCVSSISNAANIGHQQTGGAIAPAQSLAIGTPGISASPLLAEFSAPDGAHGNALAATSGKSTVTEQPLERLINAVKSMSSKALSAAVMDIGSVVSMNDRIAGSAPGNGSRAAVVRIWFHD
Length1062
PositionTail
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.03
Grand average of hydropathy-0.863
Instability index66.67
Isoelectric point9.79
Molecular weight117749.62
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05608
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     720.47|      71|      71|     359|     429|       3
---------------------------------------------------------------------------
  137-  188 (48.05/ 6.01)	....................L.....QP....HQQLLS.QNVQNNVA......S.....................Q.......PNL...P........PV.......SSLA..QTP....SQN.....................IVQNSNIqnitgPNSVG
  193-  269 (76.38/13.93)	Q....NSNL.........QNM.fpgsQRqmpgRQQIVPPQNSQQYLY......Q.....................QQFK.QK...L...QlqsqmqqqQQ.NLL...QPN.QLQSS.Q.QS.......................IMQTSSV......MQPS
  272-  337 (62.64/10.09)	Q....TSSLssipqnqqsTNV.....QQ....PMQSMPQQHSQVIRH......Q.....................QQTAvTHQPSLpsqQ........QQ.QLMGH.........................................QPNT.....TNMQH
  359-  429 (132.36/29.57)	Q....QSNL.........TNL.....QQ....RQQLINQQNNPANIH......Q.....................QQFG.NNGPGL...Q........QQ.HLLGHESGNADMQTS.H.HSTH.....................MLQQPKV.....PMQQQ
  431-  502 (72.90/12.96)	Q....Q.NT.........SNLllphsQQ....PQPLGSQQQLMPQIHtqsaqlQ.....................QQL......GL...Q........QQ.P....NPSQRDMQQRiQ.ASGS.....................LLQQQNV......LDQK
  509-  599 (50.35/ 6.66)	QrtlpETSA.........TSL.....DS....TAQ..TAQPSGADWQ......EevyrklqtmkesylpemnemyQKIA.NK...L...Q........QH.DSLPQQPKSDQIDKL.R.AYKT.....................MLERMMA.....LLQIP
  666-  732 (83.14/15.82)	P....QLQS.........TNL.....QG....SVPTM.QQNNIASLQ......H.....................NALA.GVSTG.............QQ.NMMNSMQPVTNLDSG.HgNSMN.....................SLQQ..V.....PMSSL
  733-  808 (59.10/ 9.10)	Q....QNPV.........ST.................PQQTNINSLP......S.....................Q.....GGANM...I........QP.NAL..QSGSSALQ...H.QLKHqqeqqmlqsqqfkqqyqqrqqLMQRQQL.....LQQQQ
  816-  869 (60.64/ 9.53)	Q....LSSQ.........LQT.....HQ....MPQL.HQMNDINDIK.....mR.....................QGMG.VKS.GV...F........QQ.HL..........TSG.Q.HSTY.....................SHQQLK...........
  870-  932 (74.91/13.52)	Q....GSAF.........P.......VS....SPQLL.QAASP.QIQ......Q.....................H.....SSPQV...D........QQnHLPSKAKVTTPLQSS...NSPF.....................VGPTPSP.....PLAPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.54|      18|      28|     935|     962|       4
---------------------------------------------------------------------------
  935-  952 (32.77/10.27)	PGESEKPIPCVSSISNAA
  974-  991 (29.77/22.36)	PGISASPLLAEFSAPDGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.02|      12|      17|     104|     115|       5
---------------------------------------------------------------------------
  104-  115 (24.34/11.72)	QVGPSHKPPDQG
  124-  135 (22.67/10.34)	NLGQQHSIPLPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.24|      20|      28|      31|      55|       6
---------------------------------------------------------------------------
   31-   55 (29.40/33.45)	QRIVNKIMKTlkkhlAVSGPDGLHE
   61-   80 (34.84/24.80)	QRFEDKIFTA.....ATSQTDYLRK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05608 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EKQIINLINSNRPRKGMNSVQAGQLPPTHMSSMQQPQSQVTQVHSHENQMNPQLQSTNLQGSVPTMQQNNIASLQHNALAGVSTGQQNMMNSMQPVTNLDSGHGNSMNSLQQVPMSSLQQNPVSTPQQTNINSLPSQGGANMIQPNALQSGSSALQHQLKHQQEQQMLQSQQFKQQYQQRQQLMQRQQLLQQQQLHHPAKPQLSSQLQTHQMPQLHQMNDINDIKMRQGMGVKSGVFQQHLTSGQHSTYSHQQLKQGSAFPVSSPQLLQAASPQIQQHSSPQVDQQNHLPSKAKVTTPLQSSNSPFVGPTPSPPLAPSPMPGESEKPIPCVSSISNA
2) KKQLYQTQRTLPETSATSLDSTAQTAQPSGADWQEEV
3) LPEMNEMYQKIANKLQQHDSLPQQPKSDQIDKLRA
4) METKSQNTLANNMPPNQVGPSHKPPDQGLVLQSQVHNL
5) QLQSQMQQQQQNLLQPNQLQSSQQSIMQTSSVMQPSMMQTSSLSSIPQNQQSTNVQQPMQSMPQQHSQVIRHQQQTAVTHQPSLPSQQQQQLMGHQPNTTNMQHAQMLGQQNNVGDIQQPQRMLSQQSNLTNLQQRQQLINQQNNPANIHQQQFGNNGPGLQQQHLLGHESGNADMQTSHHSTHMLQQPKVPMQQQSQQNTSNLLLPHSQQPQPLGSQQQLMPQIHTQSAQLQQQLGLQQQPNPSQRDMQQRIQASGSLLQ
6) QQHSIPLPGQLQPHQQLLSQNVQNNVASQPNLPPVSSLAQTPSQNIVQNSNIQNITGPNSVGTTISQNSNLQNMFPGSQRQMPGRQQIVPPQNSQ
615
502
550
88
234
127
951
538
584
125
494
221










Molecular Recognition Features






MoRF SequenceStartStop




1) AAVVRIWFHD
1053
1062