<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05599

Description Uncharacterized protein
SequenceMNKTQKRVHALNRELPPPNEQFILDFEQLQSQCADQDQLRSVTEAILISLVVQCSGHGPRADFLLFVLRSLCGIGCINWDSLLPSLLSSVSSAELPVGQLSQAVPTVSSSSLSQTGMLPPPSTIANSSNFQSSNPASPLTSVHTIGSPAQSTMEPLSCAAMSPVKSSDISSAGQQSKLRGSPSVRTNDISNSSLRQLCCKIILTGLEFSLKPVTYAEIFNYMLNWLVNWDQRQQGIDESDVIKSWRPDKAVIAWLHSCLDVIWLLVDEGKCRVPFYELLRSDLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILNQTIPNVSGEAVAHLRLSPITYLSVLGEPLHGEDIASSIQKGSLDWERAVRCIRHALRTTPSPDWWRRVLVLAPCYRNSSQGPTAGAVFSSEMICEATIDRIVELLKMTNSEINCWQDWLVFSDIFYFLIKSGCIDFVDFVDKLVSRLTEGDHHILKTNHVTWLLAQIIRIELVMNALNSDPRKVETTRKILSFHREDRSSDPNNPQSILLDFVSSCQNLRIWSLNSSTREYLNNEQLQKGKQIDEWWRQASKGERMMDYMNMDERSIGMFWVVTYTMAQPACETVMNWLNSAGVADLLPGANLQQAERLMATREVSPLPMSLLSGFSINLCVKLSYQMEDSLFSGQVIPSIAMVETYTRLLLLAPHSLFRSHFNHLVQRNPSLLSKPGVTLLVLEILNYRLLPLYRYQGKSKALMYDVTKIISAIKGKRGDHRVFRLAENLCLNLIFSLRDFFLVKREGKGPTEFTETLNRVTVITLAILIKTRGIADAEHLLYLQNMLEQIMATSHHTWSEKTLHHFPSVLREALSGQTDKRSLAIQTWQQAETTVIHQCTQLLSPSADPSYVMTYISHSFPQHRQYLCAGALILMHGHAENINSGNLGRVLREFSPEEVTSNIYTMVDVLLHHMQIELQQGHSSQDLMLKACASIAFFVWTNELLPLDILLLALIDRDDDPHALRMVISLLDRPELQQRVKHFCMTRGHPEHWLYSGIFKRVELQKALGNHLAWKDRYPVFFDDIAARLLPVIPLIIYRLIENDAMDTAERLLAMYSPLLAYYPLRFTFVRDILAYFYGHLPGKLIVRILNVLDISKIPFSESFPQQISLTNPVMCPPLDYFTTLLLGIVNNVIPPLHNNSKSGSMGDASSNTLRTAQSKPPAVSQSGSANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPISASQIVQSLVQIVVNIQPTLIQSSNALHGGSNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSNFASRSGYTCQQLSCLLIQACGLLLAQLPSDFHSQLYLETTRIIKENWWLKDGTRSLGEIDSAVGYALLDPTWAAQDNTSTAIGNVVALLHSFFSNLPQEWLEGTNVIIKQLRPVTSVAMLRIAFRVMGPLLPKLANAHALFNKTLSSLLTILVDVFGKNSQTSIAVDASDIADIIDFLHHVVHYEGQGGPVQASSKPRPEVLALIGRASESLRPDIQHLLSHLNPDVNSSVYAAFHPKLAQNPT
Length1561
PositionTail
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.07
Grand average of hydropathy-0.027
Instability index46.17
Isoelectric point6.38
Molecular weight174429.53
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05599
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     418.06|     100|     102|    1126|    1227|       1
---------------------------------------------------------------------------
 1126- 1180 (73.98/43.99)	................................................PGKLIVRILN..VLDISKIPFSESFP.QQ.ISLTNPV..MCP......PLDYFTTL.LLGIVNNV.IPP
 1181- 1287 (136.19/92.39)	LHNNSKSGSMGDASSNTLRTAQSKPPAVSQSGSANASEGQKAFYQiqdPGTYTQLVLEtaVIEILSLPISASQI.VQ..SLVQIVvnIQP......TLIQSSNA.LHGGSNSVgQGS
 1288- 1362 (95.37/59.96)	VLPTSPSG....GSTDSLGASRSTP...SVSGINTSNFASRSGYT.............................cQQ.LSCLLIQ..ACGlllaqlPSDFHSQL.YLE.TTRI.IKE
 1366- 1446 (112.52/72.30)	LKDGTR..SLGEIDS.AVGYALLDPTWAAQDNTSTA...................IGN..VVALLHSFFS.NLP.QEwLEGTN.V..IIK......QLRPVTSVaMLRIAFRV.MGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.94|      25|     102|      15|      42|       2
---------------------------------------------------------------------------
   15-   42 (35.77/31.54)	LPPPNEqfILDFEQLQSQcADQDQLRSV
  118-  142 (45.17/26.15)	LPPPST..IANSSNFQSS.NPASPLTSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.55|      20|     180|     263|     287|       3
---------------------------------------------------------------------------
  263-  287 (31.50/28.21)	WLLVDEgkcrvPFYELLRSD.LQFIE
  450-  470 (33.05/17.41)	WLVFSD.....IFYFLIKSGcIDFVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.96|      19|     110|     492|     511|       4
---------------------------------------------------------------------------
  492-  511 (30.01/25.04)	VTWLLAQIIrIELVMNALNS
  605-  623 (38.95/27.44)	VTYTMAQPA.CETVMNWLNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     131.23|      51|     145|     794|     847|       9
---------------------------------------------------------------------------
  794-  825 (43.06/27.21)	....................PTEFTETLNR.VTVITLAI..LIKTRGIADAEHLL
  827-  845 (16.16/ 6.94)	LQNMLEQIMATSHHTWSEK....................................
 1043- 1097 (72.01/44.65)	FKRVELQKALGNHLAWKDRyPVFFDDIAARlLPVIPLIIyrLIENDAMDTAERLL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05599 with Med23 domain of Kingdom Viridiplantae
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