<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05598

Description Uncharacterized protein
SequenceMDFDSIAGEMRVDATTNWKEYTSPDGRKYYYNKITNESKWSVPEELKLARELVEKAIVSGARPEALLNSHPQPSPTPSAIEATPNADNSSLPSQGEPSSPVSVSPVVTTSISNLQSEMPSGSSPSPADAITGTKVDELEAPLNTVTPSDTSVGSDKAIVTDINTAVTPMNDVDNDSAQATLGSADGVSAEDKEDGKNDSIGEKSNDEAAETKAVEPEPPVYANKMEAKDAFKALLESVNVGSDWTWDRSMRLIINDKRYGALKTLGERKQAFNEYLNQRKKQEAEEKRMKQKKAREDFKKMLEESTDLTSSARWSKAVSIFENDERFKAVERDRDRRDMFESFLEELLNKERAKVQEERKRNIMEYKKFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLHDLEKEEEEQKKIQKEELRKTERKNREEFRKLMEEHIASGILTAKTHWRDYYTKVKDLHAYVAVASNTSGSTPKDLFEDVAEELEKQYHEEKSRIKDTVKLAKITLSSTWAFEDFKSALSKAISTPPISDFNLKLVFDELLERAKEKEEKEAKKRKRLSDDFFHLLHSTKDITVSLKWEDCRPHVEDSQEFRSIGDESLCKEVFEEYIAQLKEEAKESERKRKEERAKKEKDREERERRKGKQRKEKEGGRERGKDEAHKKDKADSDSMELTEIQTSKENKRSEDDNRKQRKKLQSPEHEMDKGKTKKSHGHGSDRKKSRRHSSGHESDEGRHKRHKRDHCREGDLEDGEFGDDHVDRC
Length770
PositionUnknown
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-1.225
Instability index48.24
Isoelectric point5.79
Molecular weight88804.51
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05598
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.49|      16|      19|     630|     645|       1
---------------------------------------------------------------------------
  623-  638 (21.31/ 7.87)	KEEAKESERKRKEERA
  639-  654 (24.83/10.61)	KKEKDREERERRKGKQ
  688-  703 (20.35/ 7.13)	SKENKRSEDDNRKQRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.47|      18|      19|     142|     160|       2
---------------------------------------------------------------------------
  142-  160 (26.89/21.57)	LNT.VTPSDtSVGSDKAIVT
  162-  180 (28.59/17.77)	INTaVTPMN.DVDNDSAQAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     428.50|      65|      65|     212|     276|       3
---------------------------------------------------------------------------
  212-  276 (101.57/58.48)	KAVEPEPPVYANKMEAKDAFKALL.ESV.N.VGSD.WT....WDRSMRLIIND.KRYGAL..KTLG.E.R..KQA.......................FNEYL
  280-  344 (91.59/51.96)	KKQEAEEKRMKQK.KAREDFKKMLeEST.D.LTSS.AR....WSKAVSIFEND.ERFKAV..ERDR.D.R..RDM.......................FESFL
  356-  411 (76.47/42.09)	Q...EERK..RNIME....YKKFL.ESC.DfIKAS.TQ....WRKVQDRLEAD.ERCSRL..EKI..D.R..LEI.......................FQDYL
  422-  490 (56.91/29.32)	KKIQKE.ELRKTERKNREEFRKLM.EE..H.IASGiLTakthW.RDYYTKVKDlHAYVAVasNTSG.StP..KDL.......................FED..
  492-  552 (32.53/13.40)	.AEELEKQYHEEKSRIKDTVK..L.AKI.T.LSST.WA....FE...............................dfksalskaistppisdfnlklvFDELL
  555-  618 (69.43/37.50)	AKEKEEKEAKKRK.RLSDDFFHLL.HSTkD.ITVS.LK....WE.DCRPHVEDsQEF.....RSIGdE.SlcKEV.......................FEEY.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.94|      22|      47|      71|      92|       4
---------------------------------------------------------------------------
   71-   92 (41.19/25.02)	PQ.PSPTPS.AIEATP..NADNSSLP
   95-  115 (24.44/12.12)	GE.PS...S.PVSVSPvvTTSISNLQ
  119-  141 (25.31/12.79)	PSgSSPSPAdAITGT...KVDELEAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.64|      16|      17|     727|     742|       5
---------------------------------------------------------------------------
  727-  742 (27.78/15.15)	RKKSRRHSSGHESDEG
  745-  760 (27.87/15.22)	KRHKRDHCREGDLEDG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05598 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EAKESERKRKEERAKKEKDREERERRKGKQRKEKEGGRERGKDEAHKKDKADSDSMELTEIQTSKENKRSEDDNRKQRKKLQSPEHEMDKGKTKKSHGHGSDRKKSRRHSSGHESDEGRHKRHKRDHCREGDLEDGEFGDDHVDRC
2) SGARPEALLNSHPQPSPTPSAIEATPNADNSSLPSQGEPSSPVSVSPVVTTSISNLQSEMPSGSSPSPADAITGTKVDELEAPLNTVTPSDTSVGSDKAIVTDINTAVTPMNDVDNDSAQATLGSADGVSAEDKEDGKNDSIGEKSNDEAAETKAVEPEPPVYANKME
625
59
770
226










Molecular Recognition Features






MoRF SequenceStartStop




1) GRKYYYNKIT
26
35