<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05597

Description Uncharacterized protein
SequenceMTPIERVDATTNWKEYTSPDGRKYYYNKITNESKWSVPEELKLARELVEKAIVSGARPEALLNSHPQPSPTPSAIEATPNADNSSLPSQGEPSSPVSVSPVVTTSISNLQSEMPSGSSPSPADAITGTKVDELEAPLNTVTPSDTSVGSDKAIVTDINTAVTPMNDVDNDSAQATLGSADGVSAEDKEDGKNDSIGEKSNDEAAETKAVEPEPPVYANKMEAKDAFKALLESVNVGSDWTWDRSMRLIINDKRYGALKTLGERKQAFNEYLNQRKKQEAEEKRMKQKKAREDFKKMLEESTDLTSSARWSKAVSIFENDERFKAVERDRDRRDMFESFLEELLNKERAKVQEERKRNIMEYKKFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLHDLEKEEEEQKKIQKEELRKTERKNREEFRKLMEEHIASGILTAKTHWRDYYTKVKDLHAYVAVASNTSGSTPKDLFEDVAEELEKQYHEEKSRIKDTVKLAKITLSSTWAFEDFKSALSKAISTPPISDFNLKLVFDELLERAKEKEEKEAKKRKRLSDDFFHLLHSTKDITVSLKWEDCRPHVEDSQEFRSIGDESLCKEVFEEYIAQLKEEAKESERKRKEERAKKEKDREERERRKGKQRKEKEGGRERGKDEAHKKDKADSDSMELTEIQTSKENKRSEDDNRKQRKKLQSPEHEMDKGKTKKSHGHGSDRKKSRRHSSGHESDEGRHKRHKRDHCREGDLEDGEFGDDHVDRC
Length765
PositionUnknown
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-1.234
Instability index48.91
Isoelectric point5.88
Molecular weight88278.98
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05597
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.49|      16|      18|     625|     640|       1
---------------------------------------------------------------------------
  618-  633 (21.31/ 6.92)	KEEAKESERKRKEERA
  634-  649 (24.83/ 9.35)	KKEKDREERERRKGKQ
  683-  698 (20.35/ 6.26)	SKENKRSEDDNRKQRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      83.11|      17|      18|     138|     155|       2
---------------------------------------------------------------------------
  138-  155 (24.34/19.45)	NT.VTPSDtSVG...SDKAIVT
  158-  175 (23.41/13.34)	NTaVTPMN.DVD...NDSAQAT
  187-  206 (19.57/ 9.88)	KE.DGKND.SIGeksNDEAAET
  207-  217 (15.80/ 6.48)	KA.VEP..........EPPVYA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     450.25|      64|      65|     292|     355|       3
---------------------------------------------------------------------------
  226-  284 (76.30/44.46)	.FKALL.E...SVNVGSDWTW.........DRSMRLII.NDKRYGALKTLGE...RKQAFNEYLNQ...RK...KQEAEEK..RM
  292-  355 (102.55/62.47)	DFKKMLEE...STDLTSSARW.........SKAVSIFE.NDERFKAVERDRD...RRDMFESFLEELLNKE...RAKVQEE..RK
  360-  426 (80.80/47.55)	EYKKFLES...CDFIKASTQW.........RKVQDRLE.ADERCSRLEK.ID...RLEIFQDYLHD.LEKEeeeQKKIQKEelRK
  434-  499 (74.87/43.48)	EFRKLMEEhiaSGILTAKTHW.........RDYYTKVK.DLHAYVAVASNTSgstPKDLFEDVAEEL...E...K.QYHEE..KS
  503-  557 (51.75/27.62)	DTVK.L......AKITLSSTWafedfksalSKAISTPPiSDFNLKLV............FD....ELL..E...RAKEKEE..KE
  567-  617 (63.98/36.02)	DFFHLLHS...TKDITVSLKW.........EDCRPHVE.DSQEFRSIGDESL...CKEVFEEYIAQL..................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.88|      17|      20|      84|     100|       4
---------------------------------------------------------------------------
   62-   79 (17.57/ 8.06)	..LNSHPQ.P..SptpSAIEATP
   84-  100 (33.25/21.72)	SSLPSQGE.P..S...SPVSVSP
  107-  121 (16.05/ 6.73)	SNL..QSEmPsgS...SP...SP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.31|      20|      60|     650|     673|       5
---------------------------------------------------------------------------
  650-  669 (33.79/11.29)	RKEKEGGRERGKDEAHKKDK
  713-  732 (33.51/ 6.67)	KKSHGHGSDRKKSRRHSSGH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.94|      15|      17|     733|     747|       6
---------------------------------------------------------------------------
  733-  747 (29.41/17.02)	ESD..EGRHKRHKRDHC
  749-  765 (24.53/12.93)	EGDleDGEFGDDHVDRC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05597 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EAKESERKRKEERAKKEKDREERERRKGKQRKEKEGGRERGKDEAHKKDKADSDSMELTEIQTSKENKRSEDDNRKQRKKLQSPEHEMDKGKTKKSHGHGSDRKKSRRHSSGHESDEGRHKRHKRDHCREGDLEDGEFGDDHVDRC
2) IVSGARPEALLNSHPQPSPTPSAIEATPNADNSSLPSQGEPSSPVSVSPVVTTSISNLQSEMPSGSSPSPADAITGTKVDELEAPLNTVTPSDTSVGSDKAIVTDINTAVTPMNDVDNDSAQATLGSADGVSAEDKEDGKNDSIGEKSNDEAAETKAVEPEPPVYANKME
620
52
765
221










Molecular Recognition Features






MoRF SequenceStartStop




1) DGRKYYYNKITN
20
31