<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05593

Description Uncharacterized protein
SequenceMASPAWLPQESQPPVSGETPLPMASSAHTTPSTAPAPAPPFAYGMLQNVNASGSSQQSSTHPGMKSNSAVNPMVVQPPGVSLHAAPSFSYNIPQSGAIFSSNQQHAQSSTNMPDSVAQDVGKLSSASSIPHSVPAHTSTSIMPPPSDPNYRPATSWMPTAMSFPVLPVMPTQGNPGPPGLASSAIISSNPAAPSTGTDSSPAALLRPNMPTSAIASDPTAPQKGLPYPSVPAMAAPPQGLWLQPPQMSGVLRPPYLQYPAPFPGPFPFPARGVALPAVPIPDSQPPGVTPVGAAGGTSTPSSSHQLRGTTALQTEVISGPADDKKKLNSVDTVNEDAANNDQLDAWTAHKTEAGIIYYYNAVTGESTYDKPAGFKGESHQVSAQPIPVSMMDLPGTDWRLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDGDVTKDHLMSVSNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSLQNSPSALDLIKKKLQDSGTPVASSSIPAPSVQTGPESNGSKTVDSTAKGLQVDNNKDKAKDTNGDANVSDTSSDSEDEDNGPSKEECIIQFKEMLKERGVVPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKRLLDEASEDINYNTDYQTFRKKWRNDPRFEALDRKEQEHLLNERVLPLKKAAEEKAQAMRAAAAASFKSMLKERGDISFNSRWSRVKENLRDDPRYKCVRHEDREVLFNEYISELKAAEHAAERETKAKMEEQDKLRERERELRKRKEREEQEMERVRLKIRRKDAVTLFQALLVETIKDPLVSWTESKPKLEKDAQRRATNPDLDPLDTEKLFREHVKMLQERCAHEFRVLLAEVLTSDAASQETDDGKTVLNSWSTAKRLLKSDPRYNKVPRKEREALWRRYAEDMLRRQKASHDSREEKHTDAEGRNYLESSKHPFESGRSYERR
Length968
PositionUnknown
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-0.793
Instability index55.13
Isoelectric point8.24
Molecular weight106672.18
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05593
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     423.69|      77|     133|     572|     648|       1
---------------------------------------------------------------------------
  572-  645 (112.37/72.62)	..............................FKEML.....KERGV.VPF.SKWEKELPKIVFDPRFKAI.PSYSA..RRSLFEHYVKT..RAEEERKEKRAAQKAAIEGFKRLLDE
  646-  708 (68.81/41.33)	ASE..........................................dINYnTDYQTFRKKWRNDPRFEAL.DRKEQ..EHLLNERVLPL..KKAAEEKAQ.AMRAAAAASFK.....
  709-  779 (92.57/58.40)	................................SML.....KERGD.ISFnSRWSRVKENLRDDPRYKCV..RHED..REVLFNEYISE.lKAAEHAAE.RET.KAKMEEQDKLRER
  780-  875 (72.54/44.01)	ERElrkrkereeqemervrlkirrkdavtlFQALL.....VETIK.DPL.VSWTESKPKLEKDAQRRATnPDLDPldTEKLFREHVKM..LQE......RCAHE.....FRVLLAE
  878-  948 (77.40/47.50)	TSD................................aasqeTDDGK.TVL.NSWSTAKRLLKSDPRYNKV.PR.KE..REALWRRYAEDmlRRQKASHDSREEKHTDAEG.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     336.84|      47|      61|     123|     169|       2
---------------------------------------------------------------------------
   15-   73 (55.12/17.84)	VSGETP.LPMAS...SAHTTPSTAPAPAPPfAYgmlqnvnasgsSQQSSTHPGM............KSNS....AVNPM
   82-  115 (47.65/14.55)	LHAAPS.FSYNI...P..QSGAIF..SSNQ.QH...........AQSSTNMPD.........................S
  123-  169 (85.43/31.17)	LSSASS.IPHSV...PAHTSTSIMPPPSDP.NY...........RPATSWMPTA............MSFP....VLPVM
  178-  233 (52.79/16.82)	PGLASSaIISSN...PAAPSTGTDSSPA.A.LL...........RPN...MPTSaiasdptapqkgLPYP....SVPAM
  234-  278 (46.27/13.95)	....AA.PPQGLwlqPPQMSGVLRPP......Y...........LQYPAPFPGP............FPFPargvALPAV
  280-  320 (49.60/15.41)	IPD.SQ.PPGVT...PVGAAGGTSTPSSSH.QL...........RGTTALQTEV............ISGP.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.53|      26|      50|     346|     371|       3
---------------------------------------------------------------------------
  346-  371 (49.49/33.77)	WTAHKTEAGIIYYYNAVTGESTYDKP
  398-  423 (52.04/35.87)	WRLVSTSDGKKYYYNNRTKTSCWQIP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05593 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DSGTPVASSSIPAPSVQTGPESNGSKTVDSTAKGLQVDNNKDKAKDTNGDANVSDTSSDSEDEDNGPSKEECII
2) EHAAERETKAKMEEQDKLRERERELRKRKERE
3) IPNEVAELKKKQDGDVTKDHLMSVSNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSLQNSPSALDLIKKKL
4) MASPAWLPQESQPPVSGETPLPMASSAHTTPSTAPAPAPPFAYGMLQNVNASGSSQQSSTHPGMKSNSAVNPMVVQPP
5) PQSGAIFSSNQQHAQSSTNMPDSVAQDVGKLSSASSIPHSVPAHTSTSIMPPPSDPNYRPATSW
6) PVLPVMPTQGNPGPPGLASSAIISSNPAAPSTGTDSSPAALLRPNMPTSAIASDPTAPQKGLPYPSVPAMAAPPQGLWLQPPQMS
7) RQKASHDSREEKHTDAEGRNYLESSKHPFE
8) VALPAVPIPDSQPPGVTPVGAAGGTSTPSSSHQLRGTTALQTEVISGPADDKKKLNSVDTVNEDAANNDQLDA
497
759
422
1
93
164
931
273
570
790
495
78
156
248
960
345










Molecular Recognition Features






MoRF SequenceStartStop




1) LIKKKL
490
495