<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05585

Description Uncharacterized protein
SequenceMASPAWLPQESQPPVSGETPLPMASSAHTTPSTAPAPAPPFAYGMLQNVNASGSSQQSSTHPGMKSNSAVNPMVVQPPGVSLHAAPSFSYNIPQSGAIFSSNQQHAQSSTNMPDSVAQDVGKLSSASSIPHSVPAHTSTSIMPPPSDPNYRPATSWMPTAMSFPVLPVMPTQGNPGPPGLASSAIISSNPAAPSTGTDSSPAALLRPNMPTSAIASDPTAPQKGLPYPSVPAMAAPPQGLWLQPPQMSGVLRPPYLQYPAPFPGPFPFPARGVALPAVPIPDSQPPGVTPVGAAGGTSTPSSSHQLRGTTALQTEVISGPADDKKKLNSVDTVNEDAANNDQLDAWTAHKTEAGIIYYYNAVTGESTYDKPAGFKGESHQVSAQPIPVSMMDLPGTDWRLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDGDVTKDHLMSVSNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSLQNSPSALDLIKKKLQDSGTPVASSSIPAPSVQTGPESNGSKTVDSTAKGLQVDNNKDKAKDTNGDANVSDTSSDSEDEDNGPSKEECIIQFKEMLKERGVVPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKRLLDEASEDINYNTDYQTFRKKWRNDPRFEALDRKEQEHLLNERQRNDFY
Length690
PositionUnknown
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-0.632
Instability index59.61
Isoelectric point6.11
Molecular weight73777.32
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05585
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     157.94|      31|      42|     220|     250|       1
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   32-   62 (29.33/ 6.80)	STAPAPAP.PfaYGM.LQNVNASG.............ssqQS.STHP
  146-  177 (42.12/12.63)	SDPNYR...P..ATSWM.PTAMSFP.....vlpvMPT...QG.NPGP
  229-  269 (50.69/16.53)	SVPAMAAP.P..QGLWLQPPQMSGVlrppylqypAPF...PGpFPFP
  274-  300 (35.80/ 9.74)	ALPAV..PiP..DS...QPPGVTPV.........GAA...GG.TSTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.53|      26|      49|     346|     371|       2
---------------------------------------------------------------------------
  346-  371 (49.49/31.87)	WTAHKTEAGIIYYYNAVTGESTYDKP
  398-  423 (52.04/33.85)	WRLVSTSDGKKYYYNNRTKTSCWQIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.81|      20|     196|       3|      22|       4
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    3-   22 (37.90/15.33)	SPAWLPQESQP.......PVSGETPLP
   95-  113 (29.50/10.30)	SGAIFSSNQQH.......AQSSTN.MP
  200-  226 (25.41/ 7.84)	SPAALLRPNMPtsaiasdPTAPQKGLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.51|      19|      40|      74|      93|       5
---------------------------------------------------------------------------
   74-   93 (31.67/22.31)	VVQPPGvSLHAAPSFSYNIP
  116-  134 (32.83/18.51)	VAQDVG.KLSSASSIPHSVP
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.21|      19|      19|     648|     666|       7
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  648-  666 (34.51/32.41)	EDINYNTDYQTFRKKWRND
  670-  688 (30.69/27.87)	EALDRKEQEHLLNERQRND
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.81|      16|     316|     178|     199|       8
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  178-  199 (17.73/20.42)	PgLASSAIissnPaAPS..TGTDS
  501-  518 (28.08/10.95)	P.VASSSI....P.APSvqTGPES
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05585 with Med35 domain of Kingdom Viridiplantae
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