<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05584

Description Uncharacterized protein
SequenceMEGEGGGEGLNQAVQQQLNLKQVKTRAISLFKAISRILEDFEAYGRTNSTPKWQDILGQYSMVNLELFNIVDDIKKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMETDDTAKRDQLLLGMQNLPIGMQMEKLKARLDLISAACEGAEKVLADTRKAYCFGTRQGPAIAPTLDKGQAAKIQEQENLLRSAVNAGDGLRIPGDQRHITPAQPPLHLADALPVIVNDPTAQPQLSSNTMPAQNSLLQTSSASQLLGRSAASPSGATSTTSFDNTTASPIPYANSPRSSTNMMNTPSPQPQTTQQQPQVQQQQRQKLMQLPKQQQQHHQILAQQQQFRQSAMQGLGQLHGQHQMQFSQPLGHQQFQGRQLPSGHVQHGIGQSQLNQGNQMTRLSQFSGPANSALFSAAQTTPNTQMTSFFFISFYVGRS
Length428
PositionHead
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.05
Grand average of hydropathy-0.543
Instability index46.89
Isoelectric point9.28
Molecular weight46839.36
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05584
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.05|      18|      18|     261|     278|       1
---------------------------------------------------------------------------
  235-  253 (22.40/10.15)	SSNTMPAQNSLLQTSsASQ
  261-  278 (32.14/17.69)	SPSGATSTTSFDNTT.ASP
  284-  297 (26.51/13.34)	SP...RSSTNMMN.T.PSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.29|      20|      22|     299|     319|       2
---------------------------------------------------------------------------
  299-  318 (39.72/13.63)	PQTTQQQPQV..QQQQ.RQKLMQ
  320-  342 (29.57/11.29)	PKQQQQHHQIlaQQQQfRQSAMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.16|      46|     114|       9|      59|       3
---------------------------------------------------------------------------
   12-   59 (70.20/73.15)	QAVQQQLNLKQVKTRaISLFKA....ISRILEDF.EAY..GrTNSTPKWQDIL..GQ
  124-  178 (55.96/38.42)	QNLPIGMQMEKLKAR.LDLISAacegAEKVLADTrKAYcfG.TRQGPAIAPTLdkGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.04|      20|      25|     345|     369|       4
---------------------------------------------------------------------------
  345-  366 (37.39/22.48)	GQL.HGQHQMQFSQplGHQ.....QFQG
  372-  397 (29.65/ 7.37)	GHVqHGIGQSQLNQ..GNQmtrlsQFSG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05584 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SAVNAGDGLRIPGDQRHITPAQPPLHLADALPVIVNDPTAQPQLSSNTMPAQNSLLQTSSASQLLGRSAASPSGATSTTSFDNTTASPIPYANSPRSSTNMMNTPSPQPQTTQQQPQVQQQQRQKLMQLPKQQQQHHQILAQQQQFRQSAMQGLGQLHGQHQMQFSQPLGHQQFQGRQLPSGHVQHGIGQSQLNQGNQMTRLSQFSGPANSALFSAAQ
191
408










Molecular Recognition Features






MoRF SequenceStartStop




1) ISFYV
421
425