<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05580

Description Uncharacterized protein
SequenceMQLQISLDKLPIKRLDSIEENGVERFPPDLDYDAKRLSLIRQIDFAWAVEKDEEKKKQKSSRETSTTWQWQDLVENLQLAHQELSVIIDLINIVEANDAVTVASMTRPKLLPNEALSDRAVSAAIKLQCYRHVGKYFKQSAKAFEQQVAREARFYGALIRLQQNWKVKRQRQAAIVPGNEGFTFDLFDNSYDQAAIIRSLSMSTVRVNHDAVGMLAINVSPDLCHSLQLGFVGVQSDDTRRKSNENKSQFSGEHNLGETSEESLSDEECVKKTHSLLREVHEAIFNEQKMQFYRLRLALLSNSIYYEIDIQQIFLEHIFGKGGEKPISVGNRLSGVQEKDGSSLLGHFLKSLAHRIFSTKVLAELENVLVVNDDCINVKAEGSPNVAGLFKGKFEETHSINKYNCNLADLPVASQIINRLYQEAMVVGIKANRDFLCLSFELEQGETLGLVASVVDPENSEGCISWWLVMEDSFAEEQKLHMSITDGASEYRKFLGHLSLDLLYTTLIDLVGLCSGGGGQ
Length520
PositionHead
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.08
Grand average of hydropathy-0.289
Instability index39.47
Isoelectric point5.39
Molecular weight58536.71
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05580
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     218.99|      99|     282|      79|     203|       2
---------------------------------------------------------------------------
   22-  110 (52.55/24.88)	..........................................................................GVERFPPDL.DYDAKRLSLIRQIDFA.................wavekdeekkkqkssretsttwqwqdlvenlqLAHQELSVII..DLINiVEANDAVTVASMTRPKL
  113-  203 (80.75/75.02)	NEALSDRavsaaiklQCYRHVGKYFKQSAKA.FEQQVAREARFYGAL........IRLQQnwkvkrqrqaaivpGNEGFTFDLfDNSYDQAAIIRSLSMS...................................................................................
  261-  394 (85.70/40.23)	EESLSDE........ECVKKTHSLLREVHEAiFNEQKMQFYRLRLALlsnsiyyeIDIQQ........................................iflehifgkggekpisvgnrlsgvqekdgssllghflkslahrifstkvLAELENVLVVndDCIN.VKAEGSPNVAGLFKGKF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05580 with Med17 domain of Kingdom Viridiplantae
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