<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05575

Description Uncharacterized protein
SequenceMKSKSTIVVCSTMRETHVSAYDSCTVNLLILFPGAVSWCGKLNAIACPSETCARIPSSTGNPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTCCPHALLIANFHGRVTIWAQPSQVTNLALDASCWLREHEWQQDIAVVTKWLSGYRWLSSKPSAPANSRSTFEEKFLSRQCQTSDSLNEMCYIRHSCHDDTCNSRETIAKFVSMSVSCPVSVLVSLNINTICMLMVVMVTTMAMPEIKTPNFLCVCSVFSSGSVQLHWSQWPPQNATTPKWFCTSKGPLGCGPCGIMAGDAIITDSGTMLVTGVPIVNPSTIVVWEVMPGPGNGFQYIIYLTFVGQYMSPYDPDEGPSITGWRVQRWESSLQHDVLHPIFGNPTSSMGGQPPMQTVWQTKVELSIPPTNDFKNHQAPAVGMNTDMQKVSDFGFDKSKRFDFYPFDLPKVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTSKDQTILKIIRVLPHAIPTSQVKANSSNWERAIAERFWWSLLVGVNWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSAQHRQHYCPMAMQNMPRPRGADAAGLLLCELELHPPAEEWHRRNMFGGPWSDPDVLDSANDALKLVSLNPLDSSSLENCDVYYGANGLWPRKRRMSERDAAFGLNTYVGLGAYLGIMGSRRDAVTALWKTGIEGIWYKCMRCLRQTCAFASPASTNLPSQNDREIWWISSWAYGCPMCGGTWVRVWHPPNFVTCSAPSMDHIRRQGENACGGDYFLVGPKRLKLTEHDKLLNKFLGTGELWCLCWEGIILGNVFAVMEELVSRRKLLKKCVSNLDLEKLVLL
Length853
PositionTail
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.10
Grand average of hydropathy-0.071
Instability index46.68
Isoelectric point6.43
Molecular weight94727.71
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05575
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.87|      10|      29|     410|     419|       1
---------------------------------------------------------------------------
  410-  419 (18.90/11.24)	DFKNHQAPAV
  440-  449 (19.97/12.27)	DFYPFDLPKV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.42|      12|      19|     119|     136|       2
---------------------------------------------------------------------------
  119-  136 (17.96/22.56)	WAQPSQVTNLaldascWL
  141-  152 (23.46/12.28)	WQQDIAVVTK......WL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.68|      18|      34|     794|     811|       4
---------------------------------------------------------------------------
  794-  811 (29.80/19.84)	KLTEHDKLLNKFLGTGEL
  830-  847 (28.88/19.02)	ELVSRRKLLKKCVSNLDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.24|      32|      35|     572|     606|       5
---------------------------------------------------------------------------
  572-  606 (54.14/39.74)	AQ..HRQHycpMAMQNMPRPRGADAAGLLLCELELHP
  608-  641 (53.10/29.58)	AEewHRRN...MFGGPWSDPDVLDSANDALKLVSLNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     168.80|      48|     207|     487|     543|       6
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  487-  543 (72.65/61.67)	WHdTSKDQTILKIIRVLPHAIPTSqvKANSSNWERAIAERFWWsllvgVNWWdAVGC
  699-  746 (96.15/54.09)	WK.TGIEGIWYKCMRCLRQTCAFA..SPASTNLPSQNDREIWW.....ISSW.AYGC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05575 with Med16 domain of Kingdom Viridiplantae
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