<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05574

Description Uncharacterized protein
SequenceMDTLKRHLPVSVQEGLHELQKIAQRFEEKIFTAATSQSDYLRKISLKMLTMETKSQGSMAPNLPPNQGGPSNKPPDPGLGIPPQVHNPGQQHPIPMSNQTPNRQQLLPQNIQNSIASQPSNIAQAPIQNVGQNNPNVQNIPGQNSVGSTIGQNANMQNMFPGSQRQIQGRQQVVPQQQQQQSQNSQQYIYQQQMQQQLIRQKLQQQQQQQQQQQNLLQSNQLQSSQQPSIQTSTVMQQPSMMQTSLPSIQHNQQSNNQQQSTQSVLQQHSQVIRQQQPQQTSIIHQQQTPMTQQSILPPQQQQQQQLMGAQANAPNMHHTQILGSQNNVGDLQQPQRLLTQQNNLSNLQQQQLINQQNNLSNMHQQLGNNVPGLQPQQVLGPQPGNSGMQTSQHSAHVLQQSQVPIQQQSQQNASNLLPSQVQQSQPQAPQQQLMPQIQSQPAQLQQQLGLQQQPNPLQRDMQQRLQASGPLLQQSNVLDQQKQLYQSQRPLPETSSTSLDSTAQTGQSSGGDWQEEVYQKIKSMKESYLPELNEMYQKIASKLQQHDSLPQQPKSDQLEKLKVFKMMLERIITFLQVSKSNISPNFKEKLNSYEKQIINFINTNRPRKNMPGHLPSPHMHSMSQSQPQVTQVQSHENQMNSQLQTTNMQGSVATMQQNNMAAMQHNSLSGVSTAQQSKMNSMQPSTNLDSGPGNAVNSLQQVPVSSLQQNPVSAPQLTNVNSLSSQAGVNVVQPNHNPLQPGSSMLQHQQLKQQQEQQMLQNQQLKQQYQRQLIQRKQQQILQQQQQQQQLHQTAKQQLPAQLPTHQIQQLHQMNDANDIKMRQGISVKPGVFQQPLTSSQRSTYPHQQMKGSPFPVSSPQLLQATSPQIPQHSSPQVDQQNHLPSLTKVATPLQSANSPFVVPTPSPPLAPSPMPGDSEKPISGVSSISNAANIGYQLTGGAAAPAQSLAIGTPGISASPLLAEFTGPDGAHGNALAPTSGKSTVTEQPIERLIKAVKSMSPKALSSAVSDIGSVVSMNDRIAGSAPGNGSRAAVGEDLVAMTNCRLQARNFITQDGANGTRRMKRYTNATPLNVVSSPGSMNDSIKQLTAEASDLDSTATSRFKMPRIEANHSLLEEIREVNQRLIDTVVDISNEEVDPTAAAAAAEGTEGTIVKCSYNAVALGPSLKSQYASAQMSPIQPLHLLVPTNYPNCSPILLDKFPVESSKENEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARIVISEHAQQSGGGSFSSKYGTWENCLTT
Length1276
PositionTail
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.03
Grand average of hydropathy-0.788
Instability index72.88
Isoelectric point9.35
Molecular weight140422.46
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05574
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            11|     877.05|      90|      90|     321|     410|       6
---------------------------------------------------------------------------
   13-  100 (66.48/11.42)	.....QEGLHELQKiAQRFEekiftaatS.QSDYLRKIS..LKML..TME.TKSQGSMAPNL.................PPNQ.GGpsnKP..P....DP..GL....GipP.QV..HNPG....................QQHP.IPMSN.Q..................T
  205-  270 (54.94/ 7.89)	.............Q.QQQQQ........Q.QQQNL..LQ..SNQL....Q.SSQ.....Q........................PS...IQ..T....ST..VM.......Q.QP....SMMQTS.........LPS...........IQH..nqqsnnqqqstqsvlqqhS
  271-  320 (68.73/12.10)	QVI.RQ......QQ.PQQ................TSIIH..QQQT.pMTQ.QSILPPQQQQ................................Q....QQ..LM....G..A.QA.....................NA.........PNMH.H..................T
  321-  410 (168.46/42.57)	QILGSQNNVGDLQQ.PQRLL........T.QQNNLSNLQ..QQQL..INQ.QNNLSNMHQQL.................GNNV.PG...LQ..P....QQ..VL....G..P.QP..GNSGMQTS.........QHSAHVLQQSQ.VPIQQ.Q..................S
  411-  484 (90.97/18.90)	Q.....QNASNLLP.SQ...........V.QQ...SQPQapQQQL..MPQiQSQPAQLQQQL.......................G...LQ.......QQ...........P.NP..LQRDMQQR........lQASGPLLQQSN.VLDQQ.K..................Q
  485-  556 (60.64/ 9.63)	...........LYQ.SQRPL........P.ETSS..................TSLDSTAQT..................GQSS.GG...DW..Q....EE..VY.........QK..IKS.MKESylpelnemyQKIASKLQQHDsLPQQP.K..................S
  557-  635 (78.46/15.07)	DQL.EKLKVFKMM..LERII........TfLQVSKSNIS..P......NF.KEKLNSYEKQI.................INFI.NT...NR..P....RK..NM..........P..GH...LPS.........PH.MHSMSQSQ.PQVTQvQ..................S
  639-  744 (77.58/14.81)	Q.MNSQLQTTNMQG.SVATM..........QQNNMAAMQ............HNSLSGVSTAQqskmnsmqpstnldsgpGNAV.NS...LQqvPvsslQQnpVS....A..P.QL..TNVNSLSS.........QAGVNVVQPNH.NPLQP.G..................S
  781-  850 (75.04/14.03)	QILQQQQQQQQLHQtAKQQL........P.AQ..LPTHQ..IQQLhqMND.ANDI.KMRQ...................GISVkPG..vFQ......................QP..LTS....S.........QRSTY........PHQQ.....................
  853-  908 (61.08/ 9.77)	...GSPFPV...SS.PQLLQ........A.TSPQIPQHS..SPQ...VDQ.QNHL.............................PS...L........TK..VA....T..PlQS..ANSPF.................V........VPT.P..................S
  909-  994 (74.67/13.92)	PPLAPSPMPGDSEK.PISGV........S.SISNAANIG..YQ......L.TGGAAAPAQSL.................AIGT.PG...IS..A....SP..LLaeftG..P.DGahGNALAPTS.........GKST.V..TEQ..PIER.....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.70|      27|     114|    1094|    1121|       7
---------------------------------------------------------------------------
 1094- 1121 (42.03/31.97)	EASDLDSTATSRFKMP..RIEANHSLlEEI
 1211- 1239 (40.66/25.90)	ENEDLSVKAKSRFSISlrSLSQPMSL.GEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.03|      21|      22|    1004|    1024|       8
---------------------------------------------------------------------------
 1004- 1024 (37.45/23.98)	PKALSSAVSDIG.SVVSM.NDRI
 1029- 1049 (23.95/12.63)	PGNGSRAA..VGeDLVAMtNCRL
 1074- 1088 (27.63/15.72)	P...LNVVSSPG....SM.NDSI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05574 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IINFINTNRPRKNMPGHLPSPHMHSMSQSQPQVTQVQSHENQMNSQLQTTNMQGSVATMQQNNMAAMQHNSLSGVSTAQQSKMNSMQPSTNLDSGPGNAVNSLQQVPVSSLQQNPVSAPQLTNVNSLSSQAGVNVVQPNHNPLQPGSSMLQHQQLKQQQEQQMLQNQQLKQQY
2) NFITQDGANGTRRMKRYTNATPLNVVSSPGSM
3) NVLDQQKQLYQSQRPLPETSSTSLDSTAQTGQSSGGDWQEEV
4) QQPQQTSIIHQQQTPMTQQSILPPQQQQQQQLMGAQANAPNMHHTQILGSQNNVGDLQQPQRLLTQQNNLSNLQQQQLINQQNNLSNMHQQLGNNVPGLQPQQVLGPQPGNSGMQTSQHSAHVLQQSQVPIQQQSQQNASNLLPSQVQQSQPQAPQQQLMPQIQSQPAQLQQQLGLQQQPNPLQRDMQQRLQASGPLLQ
5) QQQQQQNLLQSNQLQSSQQPSIQTSTVMQQPSMMQTSLPSIQHNQQSNNQQQSTQSVLQQHSQV
6) RKISLKMLTMETKSQGSMAPNLPPNQGGPSNKPPDPGLGIPPQVHNPGQQHPIPMSNQTPNRQQLLPQNIQNSIASQPSNIAQAPIQNVGQNNPNVQNIPGQNSVGSTIGQNANMQNMFPGSQRQIQGRQQVVPQQQQQQSQNSQQ
7) RKQQQILQQQQQQQQLHQTAKQQLPAQLPTHQIQQLHQMNDANDIKMRQGISVKPGVFQQPLTSSQRSTYPHQQMKGSPFPVSSPQLLQATSPQIPQHSSPQVDQQNHLPSLTKVATPLQSANSPFVVPTPSPPLAPSPMPGDSEKPISGVS
598
1053
477
276
209
42
777
770
1084
518
474
272
187
928










Molecular Recognition Features






MoRF SequenceStartStop




NANANA