<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05573

Description Uncharacterized protein
SequenceMANNSQPSSMQFRPVIQAQQGQPFVPMNSQQFGPAGHAIPSSNAGMPVIQGQQLQYSQPMQQLTPRPMQPGHPVPSSQAIPMQYIQTNRPLTSIPTHSQQTVPPFSNHMPGLAVSVAAPHSSYFTLSYGQQQDNANALAQYQHPPQMFASPAGQSWPSSASQSVAAVTSVQSAGVQSSGAASTDTVTNATNQQSLSDWQEHTSADGRRYYYNKVTQQSTWSIPEELKLAREQAQKAANQGMQSETNDTSNAAVSSTATPTPTPTAVNAASLNTSLTSNHSNGLASSPSSVTPIAATDSQQSVSGLSGSSVSHSIVTPSTTGVEPSTVVTTSAAPTIVAGSSGLAENSPQQSKMPPLVENQASQDFASVNGSSLQDIEEAKRSLPVVGKNNVVPPEEKTNDDETLVYANKLEAKLAFKALLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERLRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDYVKANSHWRKIQDRLEDDDRYLRLEKIDCLLVFQDYIRDLEKEEEEQKRIQKDQIRRGERKNRDAFRKLLEEHVAAGILTAKTQWHEYCLKVRDLPQYQAVASNTSGSTPKDLFEDAAEDLEKQYHEDKTLIKDTIKSGKITVVTTSVFEEFKVAVLEEAACQTISEINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITASSKWEDCKSLFEEAQEYRSIGDESYSREIFEEYITYLKEKAKEKERKREEEKAKKEKEREEKEKRKEKEKKEKDREREKDKSKERHRKDETDSDNQDMTDGHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERKKSRKQADSPESDNENRHRRHKREHWDGSRKTGGHEELEDGELGDDVEN
Length968
PositionUnknown
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-1.103
Instability index55.09
Isoelectric point5.90
Molecular weight110270.63
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05573
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      97.34|      22|      36|     836|     857|       1
---------------------------------------------------------------------------
  791-  812 (24.31/ 8.03)	GDESYS.R..EIFEEYITYLKEKAK
  813-  834 (27.83/10.14)	EKERKReE..EKAKKEKERE.EKEK
  836-  851 (22.08/ 6.69)	.......K..EKEKKEKDREREKDK
  909-  932 (23.12/ 7.31)	SKKSRR.HgsERKKSRKQADSPESD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     151.37|      28|      30|       7|      34|       2
---------------------------------------------------------------------------
    7-   34 (57.79/35.10)	PSS....MQFRPVIQAQQGQPFVPMNSQQFGP
   40-   65 (51.47/30.51)	PSS....NAGMPVIQGQQLQYSQPM..QQLTP
   75-  103 (42.11/23.71)	PSSqaipMQY...IQTNRPLTSIPTHSQQTVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     166.13|      28|      30|     243|     270|       3
---------------------------------------------------------------------------
  127-  154 (32.21/16.57)	SYGQQQDNAnAL...........AQYQHP.PQMF.ASPAGQ
  155-  194 (24.46/10.77)	SWPSSASQS.VAavtsvqsagvqSSGAASTDTVTnATNQQS
  243-  270 (44.68/25.92)	SETNDTSNA.AV...........SSTATPTPTPT.AVNAAS
  274-  295 (30.11/15.01)	SLTSNHSNG.LA...........SSPSSVTPI.......AA
  335-  362 (34.67/18.42)	TIVAGSSGL.AE...........NSPQQSKMPPL.VENQAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     399.49|      64|      65|     427|     490|       4
---------------------------------------------------------------------------
  373-  432 (51.82/27.48)	..LQDIEEAKR..SL..PVVGknnvvppE.EKTNDDETLVYANKLEA..............K.LA...............F.KALLES...V.nvqSDWT....WE
  433-  500 (96.96/58.18)	QAMREIINDKRYNAL..KTLG.......E.RKQAFNEYLGQRKKLEAEERRMKQ.......K.RAR............EEF.TKMLEE...CkeltSSMR....WS
  501-  568 (89.80/53.31)	KAISMFENDERFNAV..ERLR.......D.REDLFESYMVELERKEKENAAEEH.......R.RNI............AEY.RKFLES...CdyvkANSH....WR
  569-  645 (74.30/42.77)	KIQDRLEDDDRYLRL..EKI........D.CLLVFQDYIRDLEKEEEEQKRIQKdqirrgeR.KNR............DAF.RKLLEEhvaA....GILTaktqWH
  646-  729 (48.70/25.35)	EYCLKVRDLPQYQAVasNTSG.......StPKDLFEDAAEDLEKQYHEDKTLIK.......D.TIKsgkitvvttsvfEEFkVAVLEE.aaC.qtiSEIN....L.
  730-  775 (37.90/18.01)	...............................KLIFEELL.ERAK.EKEEKEAKK.......RqRLA............DDF.TNLLYT...FkditASSK....WE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.20|      28|      30|     853|     880|       5
---------------------------------------------------------------------------
  853-  880 (51.47/32.94)	KER.HRKDETDS.DNQDMTDGHGYKEEKKK
  884-  908 (35.92/20.51)	KERkHRK.RHQS.SIDDV.DSE..KEEKEE
  934-  959 (32.81/18.03)	ENR.HRRHKREHwDGSRKTGGHEELED...
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05573 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KERKREEEKAKKEKEREEKEKRKEKEKKEKDREREKDKSKERHRKDETDSDNQDMTDGHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERKKSRKQADSPESDNENRHRRHKREHWDGSRKTGGHEELEDGELGDDVEN
2) MANNSQPSSMQFRPVIQAQQGQPFVPMNSQQFGPAGHAIPSSNAGMPVIQGQQLQYSQPMQQLTPRPMQPGHPVPSSQAIPMQYIQTNRPLTSIPTHSQQTVPPFSNHMPGL
3) NANALAQYQHPPQMFASPAGQSWPSSASQSVAAVTSVQSAGVQSSGAASTDTVTNATNQQSLSDWQEHTSADGRRYY
4) SIPEELKLAREQAQKAANQGMQSETNDTSNAAVSSTATPTPTPTAVNAASLNTSLTSNHSNGLASSPSSVTPIAATDSQQSVSGLSGSSVSHSIVTPSTTGVEPSTVVTTSAAPTIVAGSSGLAENSPQQSKMPPLVENQASQDF
814
1
134
221
968
112
210
365










Molecular Recognition Features






MoRF SequenceStartStop




1) ENRHRRHKREHWDGSRKTGGHEELEDGELGDDVEN
2) KRHQSSIDDVDSE
934
890
968
902